Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 2.4e-47 191.8 96 100.0
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 1.3e-40 169.5 88 95.5
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 1.1e-28 129.8 74 83.8
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 8.0e-27 123.6 69 88.4
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 8.9e-26 120.2 67 86.6
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 3.5e-22 108.2 74 73.0
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 1.0e-21 106.7 67 77.6
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 3.9e-21 104.8 67 73.1
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 5.1e-21 104.4 67 76.1
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 6.6e-21 104.0 67 74.6
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 8.6e-21 103.6 67 77.6
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 5.6e-20 100.9 66 71.2
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 1.6e-19 99.4 67 71.6
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 2.1e-19 99.0 55 85.5
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 2.1e-19 99.0 64 75.0
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 3.6e-19 98.2 67 68.7
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 3.6e-19 98.2 67 71.6
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 3.6e-19 98.2 67 74.6
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 4.7e-19 97.8 60 76.7
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 6.2e-19 97.4 64 71.9
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 8.1e-19 97.1 58 74.1
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 8.1e-19 97.1 75 68.0
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 1.4e-18 96.3 60 78.3
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 1.4e-18 96.3 67 73.1
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.8e-18 95.9 67 65.7
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.8e-18 95.9 67 65.7
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 1.8e-18 95.9 62 74.2
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 1.8e-18 95.9 67 70.1
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 2.3e-18 95.5 58 74.1
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 2.3e-18 95.5 67 73.1
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 2.3e-18 95.5 63 73.0
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 3.1e-18 95.1 67 67.2
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 3.1e-18 95.1 67 71.6
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 4.0e-18 94.7 64 70.3
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 4.0e-18 94.7 67 68.7
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 4.0e-18 94.7 55 81.8
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 5.2e-18 94.4 67 64.2
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 5.2e-18 94.4 67 64.2
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 6.8e-18 94.0 75 66.7
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 6.8e-18 94.0 62 72.6
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 8.9e-18 93.6 68 70.6
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 1.2e-17 93.2 67 70.1
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 1.2e-17 93.2 58 79.3
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 1.2e-17 93.2 67 67.2
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.5e-17 92.8 61 75.4
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 2.0e-17 92.4 59 72.9
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 2.0e-17 92.4 58 70.7
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 2.0e-17 92.4 55 78.2
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 2.0e-17 92.4 67 65.7
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 2.0e-17 92.4 67 65.7
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 2.6e-17 92.0 60 71.7
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 2.6e-17 92.0 66 66.7
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 2.6e-17 92.0 66 66.7
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 2.6e-17 92.0 67 65.7
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.6e-17 92.0 67 65.7
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 3.4e-17 91.7 55 78.2
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 3.4e-17 91.7 67 65.7
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 4.4e-17 91.3 56 73.2
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 4.4e-17 91.3 56 73.2
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 5.8e-17 90.9 58 75.9
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 5.8e-17 90.9 62 71.0
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 7.6e-17 90.5 55 76.4
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 7.6e-17 90.5 55 78.2
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 7.6e-17 90.5 67 64.2
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 9.9e-17 90.1 56 80.4
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 9.9e-17 90.1 56 80.4
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 9.9e-17 90.1 55 74.5
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 1.3e-16 89.7 66 65.2
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 1.7e-16 89.4 55 74.5
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 1.7e-16 89.4 57 71.9
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 1.7e-16 89.4 57 71.9
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 1.7e-16 89.4 50 82.0
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 2.2e-16 89.0 62 67.7
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 2.9e-16 88.6 55 74.5
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 2.9e-16 88.6 67 64.2
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 3.7e-16 88.2 55 72.7
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 3.7e-16 88.2 57 71.9
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 3.7e-16 88.2 57 71.9
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 3.7e-16 88.2 55 72.7
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 3.7e-16 88.2 68 64.7
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 4.9e-16 87.8 67 62.7
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 4.9e-16 87.8 67 62.7
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 8.3e-16 87.0 55 72.7
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 8.3e-16 87.0 56 73.2
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 1.1e-15 86.7 50 80.0
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.1e-15 86.7 67 62.7
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 1.1e-15 86.7 67 62.7
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.4e-15 86.3 55 72.7
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 1.9e-15 85.9 60 66.7
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 1.9e-15 85.9 67 62.7
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 2.4e-15 85.5 55 70.9
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.4e-15 85.5 60 68.3
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.4e-15 85.5 60 68.3
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 2.4e-15 85.5 68 63.2
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 3.2e-15 85.1 53 73.6
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 9.2e-15 83.6 63 65.1
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.6e-14 82.8 55 72.7
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 1.0e-13 80.1 50 76.0
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 1.0e-13 80.1 47 80.9
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 2.3e-13 79.0 67 61.2
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 2.3e-13 79.0 72 59.7
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 5.1e-13 77.8 53 66.0
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 6.6e-13 77.4 42 85.7
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 1.9e-12 75.9 47 78.7
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 2.1e-11 72.4 67 62.7
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 4.0e-10 68.2 63 52.4
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 6.8e-10 67.4 46 65.2
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 4.9e-08 61.2 43 67.4
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 2.1e-06 55.8 43 58.1


User provided reference genes

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