Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 3.4e-101 371.7 192 100.0
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.7e-95 351.3 192 94.3
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.1e-66 256.1 145 93.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 2.7e-66 255.8 145 92.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.1e-64 250.4 145 92.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 4.8e-63 245.0 152 88.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.4e-62 242.7 145 89.0
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.8e-60 235.3 149 83.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 3.8e-60 235.3 145 86.2
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 5.0e-60 235.0 146 83.6
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 5.0e-60 235.0 148 83.8
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 5.0e-60 235.0 140 85.7
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 6.5e-60 234.6 145 85.5
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 1.1e-59 233.8 139 87.1
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.1e-59 233.8 146 85.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.4e-59 233.4 146 83.6
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.9e-59 233.0 146 82.9
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.5e-59 232.6 144 81.9
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.5e-59 231.5 143 84.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 5.5e-59 231.5 143 84.6
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 5.5e-59 231.5 142 83.1
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.5e-59 231.5 146 82.9
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.5e-59 231.5 160 75.6
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.5e-59 231.5 152 79.6
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.5e-59 231.5 152 79.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 5.5e-59 231.5 141 83.7
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 5.5e-59 231.5 148 81.1
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.2e-59 231.1 146 82.9
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 9.4e-59 230.7 143 83.9
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 9.4e-59 230.7 140 85.0
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 9.4e-59 230.7 140 85.0
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 9.4e-59 230.7 144 82.6
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.2e-58 230.3 145 80.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.2e-58 230.3 145 80.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-58 230.3 151 79.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-58 230.3 151 79.5
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 1.2e-58 230.3 147 81.0
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.2e-58 230.3 149 81.9
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.2e-58 230.3 148 80.4
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.1e-58 229.6 141 82.3
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.1e-58 229.6 149 81.2
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 2.7e-58 229.2 149 81.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.7e-58 229.2 144 80.6
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 2.7e-58 229.2 144 81.2
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 2.7e-58 229.2 144 81.2
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 3.6e-58 228.8 141 83.7
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.6e-58 228.8 156 76.9
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.6e-58 228.4 148 79.7
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 6.1e-58 228.0 149 81.2
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 6.1e-58 228.0 149 79.9
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 6.1e-58 228.0 150 82.0
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 6.1e-58 228.0 144 82.6
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 7.9e-58 227.6 148 79.7
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 7.9e-58 227.6 146 80.8
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 7.9e-58 227.6 139 84.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 7.9e-58 227.6 139 83.5
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.0e-57 227.3 146 80.8
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.0e-57 227.3 144 82.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-57 226.5 148 80.4
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.8e-57 226.5 143 82.5
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-57 226.1 148 77.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 3.0e-57 225.7 142 81.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.9e-57 225.3 145 82.1
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.9e-57 225.3 138 81.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.7e-57 224.6 140 82.1
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 8.8e-57 224.2 149 78.5
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 8.8e-57 224.2 141 83.0
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 8.8e-57 224.2 144 79.9
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.5e-56 223.4 146 80.1
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.5e-56 223.4 141 81.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.9e-56 223.0 144 80.6
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 2.5e-56 222.6 147 79.6
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.5e-56 222.6 147 78.2
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 4.3e-56 221.9 138 83.3
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 5.7e-56 221.5 138 81.2
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 9.7e-56 220.7 144 78.5
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.7e-56 220.7 144 78.5
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.7e-56 220.7 144 77.8
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 9.7e-56 220.7 138 81.9
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.7e-56 220.7 148 81.1
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 1.3e-55 220.3 146 76.7
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.3e-55 220.3 142 80.3
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.7e-55 219.9 140 81.4
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.7e-55 219.9 146 78.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.8e-55 219.2 144 76.4
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 2.8e-55 219.2 135 85.2
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 4.8e-55 218.4 136 83.8
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 6.3e-55 218.0 139 80.6
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 6.3e-55 218.0 140 79.3
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.2e-55 217.6 142 78.2
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 8.2e-55 217.6 146 76.7
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 8.2e-55 217.6 135 82.2
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 3.1e-54 215.7 136 82.4
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.1e-54 215.7 125 92.8
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 4.1e-54 215.3 142 77.5
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 6.9e-54 214.5 142 76.8
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 6.9e-54 214.5 143 76.9
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.2e-53 213.8 145 77.2
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.3e-52 210.3 139 79.1
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 1.7e-52 209.9 145 75.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.2e-52 209.5 140 77.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 3.8e-52 208.8 145 73.1
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 5.5e-51 204.9 146 74.7
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 5.5e-51 204.9 147 71.4
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 7.9e-50 201.1 138 73.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.0e-49 200.7 147 70.7
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.5e-48 196.8 144 70.1
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 7.4e-48 194.5 147 69.4
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.2e-47 193.0 148 69.6
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.8e-47 191.8 143 68.5
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 8.2e-47 191.0 143 68.5
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.4e-46 189.5 143 67.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.1e-46 188.7 140 67.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.1e-46 188.7 145 69.7
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 4.1e-46 188.7 139 69.8
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 7.0e-46 188.0 136 69.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-45 187.2 138 70.3
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-45 187.2 146 68.5
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.2e-45 187.2 138 70.3
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.2e-45 187.2 138 70.3
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.0e-45 186.4 141 68.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.6e-45 186.0 118 80.5
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 4.5e-45 185.3 137 69.3
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.8e-44 182.2 139 68.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 2.5e-43 179.5 142 67.6
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.2e-43 179.1 120 80.0
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 7.2e-43 177.9 139 69.1
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.2e-42 177.2 139 69.1
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.6e-42 175.6 138 68.1
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.6e-42 175.6 138 68.1
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 1.8e-41 173.3 135 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 5.2e-41 171.8 139 61.9
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 6.3e-39 164.9 139 64.0
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 7.0e-38 161.4 138 58.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 2.6e-37 159.5 142 59.2
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.0e-33 146.0 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.4e-32 142.1 129 54.3
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.7e-32 141.7 130 59.2
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.7e-29 132.9 135 55.6
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.2e-26 124.0 109 63.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.4e-22 109.8 95 61.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.1e-22 109.0 95 62.1
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 4.5e-21 105.5 130 40.8
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.2e-18 97.4 138 39.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.2e-13 80.9 48 81.2
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.3e-12 77.4 87 48.3


User provided reference genes

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