Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.2e-227 791.6 450 100.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.3e-208 728.4 456 88.2
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 3.5e-157 558.9 454 70.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.6e-157 558.5 454 70.7
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 7.8e-157 557.8 453 68.9
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 3.3e-147 525.8 469 68.2
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.2e-136 490.7 450 63.6
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.9e-102 377.1 368 59.2
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 5.5e-102 375.6 462 56.7
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.5e-94 350.1 336 60.4
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 8.8e-92 341.7 485 47.0
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.2e-91 341.3 463 48.2
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.7e-90 337.4 346 57.2
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 2.2e-90 337.0 370 55.7
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.8e-89 334.0 401 49.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-88 331.3 509 44.6
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 3.5e-88 329.7 464 50.2
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 7.7e-88 328.6 336 57.1
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 1.0e-87 328.2 370 52.7
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.7e-87 327.4 364 52.5
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 1.7e-87 327.4 458 49.6
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.7e-87 327.4 341 53.7
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 1.1e-86 324.7 463 51.2
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 2.5e-86 323.6 364 52.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 4.2e-86 322.8 464 46.6
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 7.2e-86 322.0 465 47.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.4e-86 321.6 457 50.5
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.7e-85 320.1 361 53.2
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.6e-85 319.7 466 48.1
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 3.6e-85 319.7 387 50.6
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.3e-84 317.0 450 46.0
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.6e-83 313.5 468 50.4
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.4e-83 313.2 364 51.9
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.7e-83 312.4 341 54.0
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.3e-82 311.2 341 54.0
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 2.8e-82 310.1 485 43.1
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 3.7e-82 309.7 341 53.4
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 6.3e-82 308.9 407 47.9
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 8.3e-82 308.5 469 45.4
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.4e-81 307.8 459 50.5
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 4.1e-81 306.2 467 48.4
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 4.1e-81 306.2 467 49.9
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 5.4e-81 305.8 460 45.7
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 9.1e-81 305.1 477 45.9
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 1.6e-80 304.3 459 51.4
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 4.5e-80 302.8 466 46.6
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 1.0e-79 301.6 475 48.4
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 6.6e-79 298.9 365 48.5
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 1.5e-78 297.7 456 48.5
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.9e-78 297.4 464 42.9
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.3e-78 296.6 334 52.7
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 9.5e-78 295.0 354 50.3
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.6e-77 293.1 370 49.2
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 6.1e-77 292.4 463 46.9
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.8e-76 290.8 354 52.0
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-75 287.7 460 45.0
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 4.4e-75 286.2 459 49.0
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 5.7e-75 285.8 327 53.5
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 7.5e-75 285.4 297 59.3
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.7e-74 284.3 380 47.1
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 2.8e-74 283.5 527 40.0
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 3.7e-74 283.1 347 50.1
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 3.7e-74 283.1 470 44.0
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.8e-73 280.8 362 47.8
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 2.4e-73 280.4 472 44.9
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.4e-73 279.3 377 46.2
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 5.9e-72 275.8 359 46.8
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.0e-71 275.0 354 48.9
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 2.3e-71 273.9 368 49.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 5.0e-71 272.7 326 50.6
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.5e-70 271.2 326 51.2
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 2.5e-70 270.4 413 42.4
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 6.1e-69 265.8 466 40.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 6.1e-69 265.8 443 40.6
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.3e-68 263.8 325 49.8
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.2e-67 261.5 325 49.8
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-67 261.5 325 49.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-67 261.5 336 48.2
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 4.4e-67 259.6 475 41.9
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 1.7e-66 257.7 427 43.6
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.9e-66 256.9 298 52.3
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 8.3e-66 255.4 330 48.5
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 1.1e-65 255.0 514 37.5
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-64 251.5 326 50.0
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.0e-64 250.8 468 36.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.6e-64 249.6 321 48.3
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.0e-63 248.4 295 51.2
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.9e-63 246.5 321 48.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 2.8e-61 240.4 314 46.2
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.8e-60 237.7 319 47.6
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 5.2e-60 236.1 261 54.4
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 8.9e-60 235.3 322 47.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 1.2e-59 235.0 329 44.7
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.8e-59 232.6 339 43.7
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 8.3e-58 228.8 251 53.0
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.1e-57 228.4 246 54.1
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.1e-57 228.4 316 46.5
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.4e-57 228.0 363 43.5
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.9e-57 227.6 343 44.0
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 3.2e-57 226.9 223 54.7
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.2e-57 226.9 223 54.7
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.2e-57 226.9 216 59.3
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 4.1e-57 226.5 251 51.4
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 5.4e-57 226.1 223 55.2
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 5.4e-57 226.1 223 55.2
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 5.1e-55 219.5 229 53.3
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 8.6e-55 218.8 315 43.2
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 1.5e-54 218.0 219 55.7
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 1.9e-54 217.6 239 51.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.5e-54 217.2 302 46.4
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 6.2e-53 212.6 316 43.0
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 8.1e-53 212.2 275 47.6
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.3e-50 204.9 354 38.7
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.7e-50 204.5 278 46.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 2.7e-48 197.2 195 57.4
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.2e-45 186.0 228 50.0
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 4.0e-44 183.3 220 50.0
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 1.5e-43 181.4 314 41.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 2.2e-42 177.6 232 44.0
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 4.9e-42 176.4 203 53.2
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 8.4e-42 175.6 115 79.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.1e-41 175.3 336 38.1
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 2.1e-40 171.0 336 36.9
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.9e-39 166.8 357 36.7
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.3e-38 163.3 219 45.2
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 6.9e-36 156.0 200 48.0
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.2e-33 147.1 191 49.2
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 7.1e-33 146.0 194 44.8
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 1.2e-32 145.2 320 34.7
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 2.7e-32 144.1 342 33.3
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.6e-32 143.3 100 73.0
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 6.0e-32 142.9 99 73.7
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 1.1e-30 138.7 229 42.8
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.5e-30 138.3 70 94.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 1.3e-29 135.2 182 44.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 3.6e-29 133.7 148 52.0
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 4.9e-26 123.2 114 58.8
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 6.4e-26 122.9 147 49.7
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 4.2e-25 120.2 71 80.3
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.6e-24 118.2 71 78.9
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.1e-24 117.9 184 41.3
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 3.0e-23 114.0 260 36.9
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 4.3e-22 110.2 273 35.2
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.6e-22 109.8 70 74.3
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.8e-21 107.5 289 33.9
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.4e-20 104.4 244 36.5
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 7.6e-19 99.4 149 43.0
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 5.5e-17 93.2 111 45.9
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 7.1e-17 92.8 222 34.2
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.9e-14 84.7 160 39.4
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.5e-14 84.3 160 39.4
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.5e-14 84.3 160 39.4
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 9.6e-14 82.4 134 38.8
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.7e-13 80.5 167 38.9
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 4.5e-11 73.6 182 33.5
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.1e-09 68.9 60 60.0
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 1.2e-08 65.5 98 36.7
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.2e-08 65.5 72 52.8
Cre01.g021750 Chlamydomonas reinhardtii HOM05D004030 ORTHO05D004952 1.3e-07 62.0 122 33.6
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.0e-07 60.8 65 56.9
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 3.9e-07 60.5 93 39.8
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 5.1e-07 60.1 152 32.2


User provided reference genes

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