Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 0.0e+00 1137.5 596 100.0
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 0.0e+00 1127.1 596 99.0
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 0.0e+00 1087.8 596 95.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 0.0e+00 1082.8 596 94.3
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 0.0e+00 1081.6 596 94.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 0.0e+00 1078.2 596 94.3
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.6e-298 1028.9 600 90.5
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 3.7e-295 1017.7 596 87.9
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 2.2e-292 1008.4 596 87.4
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 7.4e-288 993.4 599 86.0
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 8.2e-287 989.9 588 85.4
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 7.6e-285 983.4 595 84.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.8e-278 962.2 594 82.8
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 1.8e-278 962.2 594 82.8
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 1.2e-277 959.5 596 83.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 2.6e-277 958.4 595 82.9
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.0e-276 956.4 597 82.2
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 1.7e-276 955.7 871 64.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 7.4e-272 940.3 596 81.2
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.7e-271 939.1 598 80.8
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 6.3e-271 937.2 596 81.4
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 1.1e-270 936.4 599 81.0
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 4.1e-270 934.5 601 81.5
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 5.0e-268 927.5 595 80.5
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.1e-266 922.2 594 79.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.8e-265 919.1 594 80.6
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.8e-265 919.1 596 79.7
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 8.8e-265 916.8 594 79.3
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 8.8e-265 916.8 599 78.8
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 1.1e-264 916.4 594 79.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.1e-264 916.4 594 78.6
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.5e-264 916.0 596 79.4
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 1.4e-262 909.4 596 79.2
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 2.4e-262 908.7 594 79.1
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 5.3e-262 907.5 603 79.1
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.3e-262 907.5 598 79.3
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 9.1e-262 906.7 587 80.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 1.2e-261 906.4 594 78.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 4.5e-261 904.4 595 79.3
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.9e-260 901.7 596 78.7
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-259 899.8 595 76.8
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 2.5e-259 898.7 594 77.8
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.5e-259 898.7 594 78.3
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 3.2e-259 898.3 594 78.8
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.7e-258 894.4 596 78.0
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 5.2e-257 891.0 598 77.8
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 5.2e-257 891.0 595 78.8
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.4e-256 887.9 595 77.8
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 6.3e-255 884.0 594 76.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.4e-254 882.9 598 75.8
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 1.2e-253 879.8 607 75.3
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.5e-253 877.9 604 76.3
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 5.9e-253 877.5 598 76.9
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 2.9e-252 875.2 598 76.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.8e-252 874.8 602 74.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 3.8e-252 874.8 600 74.8
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.5e-252 873.6 602 74.6
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 8.5e-252 873.6 602 74.9
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.5e-251 872.8 606 74.9
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.5e-251 872.1 605 72.2
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 2.5e-251 872.1 601 76.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 5.5e-251 870.9 595 75.1
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.2e-250 869.8 605 71.9
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.6e-250 869.4 601 75.9
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 4.7e-250 867.8 600 76.0
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 6.1e-250 867.5 595 77.3
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 6.1e-250 867.5 602 74.8
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 8.0e-250 867.1 600 75.5
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-249 866.7 600 75.5
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.5e-248 862.8 608 74.0
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.5e-248 862.8 598 76.6
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 4.4e-248 861.3 601 75.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.7e-247 859.4 602 74.8
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 9.1e-246 853.6 611 73.8
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 2.3e-244 849.0 600 73.8
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-244 848.6 594 73.9
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 2.9e-244 848.6 594 73.9
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 3.8e-244 848.2 603 74.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 8.6e-244 847.0 599 73.5
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.9e-243 845.9 599 73.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.8e-242 842.0 603 73.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.8e-242 842.0 597 73.5
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 8.0e-242 840.5 600 74.2
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 6.8e-241 837.4 594 73.4
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 6.8e-241 837.4 594 73.4
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 6.8e-241 837.4 594 73.4
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 8.9e-241 837.0 598 73.7
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.2e-240 836.6 604 72.0
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.6e-240 835.5 594 74.9
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 3.4e-240 835.1 600 73.2
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.8e-239 832.0 606 71.8
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.7e-239 831.6 602 72.1
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.4e-238 829.7 588 72.4
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 9.2e-238 827.0 605 72.6
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 1.2e-237 826.6 595 72.4
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-237 826.2 595 72.1
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 2.9e-236 822.0 595 74.1
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.8e-233 812.8 615 69.3
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 2.2e-231 805.8 593 71.2
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 8.3e-231 803.9 609 69.1
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.3e-228 796.6 596 70.1
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 1.1e-227 793.5 593 70.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 8.0e-226 787.3 607 68.2
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.5e-224 783.1 594 68.9
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.6e-224 782.3 593 69.6
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 2.9e-223 778.9 546 74.2
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 7.0e-222 774.2 604 68.5
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-220 770.0 545 71.0
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 8.6e-220 767.3 594 67.3
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.2e-216 756.9 644 64.1
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.8e-216 754.6 600 68.5
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 2.7e-213 745.7 606 65.7
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 7.8e-213 744.2 609 65.0
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.5e-211 739.2 609 64.5
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.3e-207 726.9 602 65.4
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 3.0e-204 715.7 614 62.4
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.6e-202 709.9 597 63.5
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 1.6e-197 693.3 594 63.5
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 7.6e-192 674.5 567 63.3
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.5e-184 650.2 475 72.0
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 7.9e-173 611.3 493 68.6
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.3e-172 609.8 519 65.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.2e-167 593.2 598 57.9
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 7.4e-155 551.6 604 51.5
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.2e-149 534.3 595 49.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 7.7e-144 515.0 600 52.0
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.1e-126 458.0 615 42.8
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 5.5e-126 455.7 601 48.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 2.9e-119 433.3 590 43.6
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.7e-104 383.6 209 91.4
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.1e-92 345.1 243 71.6
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.6e-77 294.7 322 52.2
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 2.2e-74 284.3 639 34.0
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.1e-70 271.9 235 65.5
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.4e-65 255.0 266 55.3
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 4.1e-60 236.9 579 31.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.5e-49 199.9 139 71.9
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.5e-43 180.3 151 64.9
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 2.0e-30 138.3 213 55.4
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 4.4e-30 137.1 98 68.4
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.9e-27 126.7 201 40.8
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.2e-24 119.0 626 22.2
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.2e-22 112.5 78 70.5
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 5.7e-22 110.2 78 64.1
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-21 107.1 78 62.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 2.3e-15 88.2 115 38.3
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 3.0e-15 87.8 90 45.6
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.5e-11 74.3 59 62.7
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 3.5e-11 74.3 94 45.7
CAN.G186.63 Capsicum annuum HOM05D004853 ORTHO05D005865 4.0e-07 60.8 48 70.8


User provided reference genes

Program Settings