Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.2e-83 313.2 160 100.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.0e-79 300.1 159 96.2
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.1e-68 263.5 164 82.3
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.1e-60 236.9 159 78.0
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 5.1e-50 201.4 159 65.4
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 8.6e-50 200.7 151 66.2
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.5e-49 199.1 166 63.9
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 2.5e-49 199.1 164 64.0
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 3.3e-49 198.7 163 64.4
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.3e-49 198.7 150 67.3
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.6e-49 198.0 179 61.5
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 8.1e-48 194.1 163 63.2
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.4e-47 193.4 154 67.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.2e-46 190.3 164 66.5
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.6e-46 189.1 149 64.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 9.9e-46 187.2 162 62.3
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.7e-45 186.4 166 60.8
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.9e-45 185.7 149 63.8
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.4e-44 182.6 152 63.2
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 7.1e-44 181.0 157 63.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 2.7e-43 179.1 154 64.3
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 2.3e-42 176.0 157 60.5
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 2.3e-42 176.0 165 58.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 3.0e-42 175.6 168 57.1
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 6.6e-42 174.5 164 58.5
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 8.7e-42 174.1 175 58.3
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.1e-41 173.7 160 59.4
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 1.5e-41 173.3 170 57.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.5e-41 173.3 187 54.0
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.5e-41 172.6 170 57.1
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.3e-41 171.8 163 55.8
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-40 170.2 155 59.4
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.2e-40 170.2 159 60.4
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 1.6e-40 169.9 152 56.6
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.6e-40 169.9 166 57.8
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.6e-40 169.9 162 58.0
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.6e-40 169.9 199 51.8
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.1e-40 169.5 162 56.8
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 2.1e-40 169.5 88 89.8
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 2.8e-40 169.1 172 55.2
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.6e-40 168.7 159 59.1
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 4.7e-40 168.3 155 59.4
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.7e-40 168.3 164 58.5
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 6.2e-40 167.9 166 57.2
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.1e-40 167.5 156 58.3
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.1e-40 167.5 156 58.3
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 8.1e-40 167.5 165 57.0
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.1e-39 167.2 159 57.9
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-39 166.4 159 57.9
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.8e-39 166.4 159 57.9
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.4e-39 166.0 166 57.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.4e-39 166.0 160 56.9
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 5.3e-39 164.9 162 54.3
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 5.3e-39 164.9 177 53.7
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 6.9e-39 164.5 149 59.7
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 6.9e-39 164.5 147 58.5
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.2e-38 163.7 157 57.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.2e-38 163.7 152 62.5
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.5e-38 163.3 158 56.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.5e-38 163.3 167 53.3
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.5e-38 163.3 151 57.0
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 2.0e-38 162.9 164 53.7
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 2.0e-38 162.9 170 54.7
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.6e-38 162.5 152 56.6
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.4e-38 162.2 156 56.4
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.4e-38 162.2 170 56.5
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.4e-38 162.2 157 56.1
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 5.8e-38 161.4 160 55.0
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 5.8e-38 161.4 161 56.5
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 7.6e-38 161.0 177 52.5
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 7.6e-38 161.0 177 52.5
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 7.6e-38 161.0 165 55.2
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.3e-37 160.2 161 54.7
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.7e-37 159.8 154 55.2
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-37 159.8 161 55.9
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.7e-37 159.8 161 55.9
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.7e-37 159.8 161 55.9
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.2e-37 159.5 165 53.3
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.2e-37 159.5 182 53.3
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 2.9e-37 159.1 152 55.9
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 2.4e-36 156.0 136 57.4
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.2e-36 155.6 162 52.5
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 5.4e-36 154.8 156 55.8
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.1e-35 152.9 110 64.5
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 6.0e-35 151.4 161 50.9
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 6.0e-35 151.4 160 52.5
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 6.0e-35 151.4 148 53.4
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 7.8e-35 151.0 159 54.1
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.0e-34 150.6 156 53.8
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.7e-34 149.8 165 54.5
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.7e-34 149.8 82 84.1
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 3.0e-34 149.1 109 65.1
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.9e-34 148.7 152 50.7
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.9e-34 148.7 150 51.3
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 5.1e-34 148.3 163 52.8
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 6.6e-34 147.9 161 51.6
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 6.6e-34 147.9 131 56.5
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 8.7e-34 147.5 161 50.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 8.7e-34 147.5 161 50.3
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.1e-33 147.1 157 52.9
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 4.3e-33 145.2 207 44.9
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 3.6e-32 142.1 139 54.7
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 3.1e-31 139.0 143 56.6
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.1e-31 139.0 97 70.1
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.0e-30 136.3 159 51.6
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 3.4e-30 135.6 132 52.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 6.4e-29 131.3 114 58.8
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 5.4e-28 128.3 72 80.6
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.5e-27 125.6 103 56.3
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.5e-27 125.6 103 56.3
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 4.6e-27 125.2 73 74.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 7.9e-27 124.4 103 58.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 5.1e-26 121.7 77 70.1
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 9.6e-25 117.5 77 72.7
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 3.7e-24 115.5 76 65.8
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 4.0e-23 112.1 112 50.0
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 5.3e-23 111.7 112 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.6e-22 109.4 77 63.6
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 3.4e-22 109.0 102 52.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 5.5e-20 101.7 53 83.0
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.1e-20 101.3 111 52.3
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 1.8e-18 96.7 76 53.9
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 3.9e-18 95.5 76 52.6
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.4e-17 91.3 48 85.4
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.6e-11 72.0 86 47.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.1e-07 59.3 36 75.0
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 4.5e-06 55.5 154 33.1


User provided reference genes

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