Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 7.4e-121 437.2 217 100.0
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.8e-104 382.1 200 93.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 6.1e-99 364.4 196 90.3
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 2.0e-97 359.4 196 88.8
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 2.0e-97 359.4 196 89.3
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.2e-96 355.9 201 87.1
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 8.3e-96 354.0 196 88.8
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.8e-82 309.7 193 78.2
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 8.9e-82 307.4 203 72.4
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 1.2e-81 307.0 195 74.9
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 4.9e-80 301.6 203 70.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 1.1e-79 300.4 203 68.0
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.6e-78 296.6 193 71.0
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 1.6e-78 296.6 193 74.1
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.7e-78 295.8 195 70.8
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.5e-78 295.4 204 70.1
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 3.5e-78 295.4 197 72.1
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 4.6e-78 295.0 209 65.6
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 7.8e-78 294.3 193 71.5
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.3e-77 292.7 193 73.1
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.3e-77 292.7 203 69.5
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 5.0e-77 291.6 193 69.4
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 5.0e-77 291.6 193 70.5
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 5.0e-77 291.6 203 67.5
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 1.5e-76 290.0 193 68.9
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.3e-76 288.9 203 67.5
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 4.3e-76 288.5 193 72.0
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 5.6e-76 288.1 203 69.0
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 5.6e-76 288.1 193 68.9
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 7.3e-76 287.7 218 65.1
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 9.5e-76 287.3 193 70.5
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 1.2e-75 287.0 193 69.4
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.6e-75 286.6 203 66.0
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 2.1e-75 286.2 209 64.6
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 4.7e-75 285.0 203 66.5
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 6.2e-75 284.6 193 68.4
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 8.1e-75 284.3 203 68.0
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 8.1e-75 284.3 203 66.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 8.1e-75 284.3 193 69.9
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.1e-74 283.9 203 66.5
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.4e-74 283.5 203 66.0
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.8e-74 283.1 207 66.7
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.3e-74 282.7 203 67.5
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 5.2e-74 281.6 193 69.4
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 6.8e-74 281.2 203 65.5
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 1.2e-73 280.4 203 66.0
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.2e-73 280.4 193 69.4
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.5e-73 280.0 209 63.2
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.5e-73 280.0 203 66.5
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 2.0e-73 279.6 195 68.7
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.0e-73 279.6 193 68.4
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 2.6e-73 279.3 203 66.0
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.6e-73 279.3 193 67.9
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 2.6e-73 279.3 224 63.4
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 2.6e-73 279.3 193 69.4
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 5.8e-73 278.1 203 67.0
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 5.8e-73 278.1 203 65.0
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 9.8e-73 277.3 193 67.4
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.3e-72 276.9 203 64.0
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.7e-72 276.6 193 67.9
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.7e-72 276.6 193 67.4
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 2.2e-72 276.2 231 59.7
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 2.2e-72 276.2 195 66.2
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 2.9e-72 275.8 193 66.3
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 4.9e-72 275.0 193 68.4
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 4.9e-72 275.0 200 66.5
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 1.4e-71 273.5 209 63.6
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 1.9e-71 273.1 203 66.5
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 1.9e-71 273.1 203 66.5
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 3.2e-71 272.3 203 66.0
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 4.1e-71 271.9 203 67.0
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 4.1e-71 271.9 203 67.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 5.4e-71 271.6 195 66.2
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 7.1e-71 271.2 203 67.0
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 1.2e-70 270.4 203 67.0
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 1.2e-70 270.4 203 65.5
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.2e-70 270.4 233 58.8
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 1.2e-70 270.4 203 63.5
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.6e-70 270.0 193 66.8
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 2.7e-70 269.2 194 62.9
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.3e-69 266.9 203 64.0
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 6.6e-69 264.6 182 67.0
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 3.3e-68 262.3 182 66.5
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 7.3e-68 261.2 182 65.9
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 2.1e-67 259.6 175 69.1
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 2.8e-67 259.2 196 63.8
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.8e-66 256.5 193 63.2
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 1.2e-65 253.8 203 60.6
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-65 253.4 206 59.7
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 3.4e-65 252.3 203 59.1
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 1.3e-64 250.4 196 60.2
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 2.2e-64 249.6 193 63.2
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.6e-62 241.9 163 69.3
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 8.6e-61 237.7 190 62.1
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 1.9e-60 236.5 190 61.6
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 7.3e-60 234.6 133 86.5
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.8e-59 232.6 193 60.1
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.1e-58 230.7 176 65.3
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 1.8e-58 229.9 176 64.2
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.1e-58 229.2 176 64.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 8.9e-58 227.6 193 61.7
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.0e-57 226.5 163 66.3
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 7.6e-57 224.6 180 65.0
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 9.9e-57 224.2 177 64.4
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 9.9e-57 224.2 177 64.4
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.9e-57 224.2 198 54.0
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 2.9e-56 222.6 177 64.4
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.9e-56 221.9 193 56.0
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 1.4e-55 220.3 177 63.3
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 5.4e-55 218.4 242 51.2
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 5.4e-55 218.4 193 56.0
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 7.1e-55 218.0 193 52.8
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.0e-53 214.2 154 65.6
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.6e-53 211.5 193 51.3
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 4.3e-52 208.8 156 64.7
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 2.6e-49 199.5 142 65.5
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.6e-49 198.0 185 52.4
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 9.9e-49 197.6 165 63.0
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.9e-48 195.3 193 48.2
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-48 194.9 198 49.0
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 8.4e-48 194.5 190 52.6
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 7.9e-46 188.0 167 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.8e-45 186.8 193 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.5e-44 183.7 166 54.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 5.6e-44 181.8 189 52.9
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 9.9e-41 171.0 106 72.6
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 6.4e-40 168.3 103 72.8
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.2e-39 166.0 144 59.0
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 2.1e-38 163.3 103 73.8
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 3.0e-37 159.5 196 40.8
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 3.0e-37 159.5 143 60.1
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 3.7e-35 152.5 129 62.0
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 3.7e-35 152.5 189 47.1
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 1.4e-34 150.6 184 46.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.4e-34 150.6 105 65.7
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 3.1e-34 149.4 141 53.9
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 7.6e-33 144.8 103 65.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 2.7e-30 136.3 201 39.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.9e-28 130.2 156 48.7
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 2.8e-27 126.3 208 38.0
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 1.5e-25 120.6 79 74.7
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.5e-20 104.0 97 52.6
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 5.7e-20 102.1 161 36.0
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.1e-18 96.3 72 61.1
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 8.5e-16 88.2 85 47.1
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 1.1e-15 87.8 61 70.5
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 8.2e-11 71.6 58 63.8
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 4.5e-09 65.9 104 32.7
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.5e-09 65.9 63 54.0
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 3.8e-08 62.8 82 39.0


User provided reference genes

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