Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 3723.7 1974 100.0
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 0.0e+00 3267.2 1998 88.9
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 0.0e+00 2392.8 1957 70.1
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 0.0e+00 2270.7 1957 67.8
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 0.0e+00 2256.5 1957 67.4
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 0.0e+00 1830.1 2025 57.4
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 0.0e+00 1244.6 949 75.7
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 4.4e-188 663.7 1994 33.5
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 6.6e-184 649.8 1989 32.1
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 5.3e-165 587.0 1982 31.2
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 6.5e-155 553.5 1932 32.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.0e-147 529.6 1979 31.8
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.8e-144 518.8 1954 30.9
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.0e-144 518.1 1967 31.2
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.0e-140 505.4 2020 31.1
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 7.4e-135 486.9 2031 29.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.8e-134 485.0 2008 30.3
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.5e-130 472.6 2018 30.4
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 7.7e-124 450.3 837 43.4
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.0e-123 449.9 2010 31.2
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 7.2e-122 443.7 2024 30.1
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.7e-116 425.2 2003 29.5
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.9e-114 419.1 1992 30.2
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 2.7e-108 398.7 2034 28.7
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 6.0e-100 370.9 2050 28.7
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.1e-96 358.6 1995 29.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.5e-90 339.0 2085 29.1
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 1.4e-88 333.2 2070 28.1
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 8.9e-88 330.5 2080 28.4
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.5e-87 327.4 1975 28.7
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.2e-86 325.9 2067 28.6
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 1.1e-85 323.6 2055 27.3
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 7.8e-84 317.4 880 39.1
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.9e-82 312.8 468 52.8
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 4.3e-82 311.6 2012 28.3
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.8e-81 308.9 878 36.4
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.4e-80 306.6 2067 27.2
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.1e-80 305.4 1996 27.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 6.8e-80 304.3 2137 27.2
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 6.8e-80 304.3 2120 27.3
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 8.9e-80 303.9 1988 27.9
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 2.9e-78 298.9 703 38.0
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.4e-77 296.6 1005 32.3
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.4e-77 296.6 1980 27.2
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.4e-77 295.8 2017 27.3
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 7.8e-76 290.8 2000 27.6
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.5e-74 285.8 2036 26.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 2.5e-74 285.8 651 39.0
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.6e-73 282.0 937 31.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 6.2e-73 281.2 1961 26.3
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.8e-72 279.6 2023 27.4
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.0e-72 278.5 2025 27.1
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 3.4e-71 275.4 2002 27.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.9e-69 269.6 852 34.2
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.2e-68 266.9 2008 26.9
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.1e-68 266.2 2104 24.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.0e-67 263.8 2016 26.8
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 6.6e-67 261.2 737 31.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 3.3e-66 258.8 686 39.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 9.9e-63 247.3 831 33.7
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.2e-62 246.1 814 36.1
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 2.9e-62 245.7 624 38.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 5.4e-61 241.5 458 47.4
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 1.6e-60 240.0 2049 26.7
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 4.6e-60 238.4 1188 27.4
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.6e-60 238.4 2041 26.9
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 4.6e-60 238.4 661 37.5
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.0e-60 238.0 734 37.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 5.1e-59 235.0 2004 26.7
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 6.7e-59 234.6 654 37.5
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.9e-58 233.0 643 39.3
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 4.8e-57 228.4 926 30.7
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.4e-56 226.9 961 32.0
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 3.1e-56 225.7 648 39.5
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 3.4e-55 222.2 1975 23.6
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 9.3e-53 214.2 842 33.4
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 1.2e-52 213.8 2073 26.3
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.9e-50 206.5 686 37.5
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 2.1e-49 203.0 707 32.8
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.8e-49 202.6 711 34.3
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.7e-49 202.2 511 44.6
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 4.8e-49 201.8 759 36.8
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.1e-48 200.7 2007 24.3
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 5.8e-47 194.9 2028 25.6
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.0e-46 194.1 2001 26.1
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.3e-46 193.7 650 35.8
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 8.4e-46 191.0 2080 25.4
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.9e-45 189.9 648 36.1
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-44 186.8 896 28.1
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.1e-44 186.4 692 34.8
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.6e-44 185.3 883 28.9
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 4.6e-44 185.3 672 36.2
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 4.6e-44 185.3 1997 24.4
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.8e-43 183.3 291 43.0
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.3e-43 183.0 718 34.3
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 5.9e-39 168.3 2168 25.2
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 6.5e-38 164.9 424 35.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 1.1e-37 164.1 685 34.0
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 1.4e-37 163.7 684 33.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.9e-37 163.3 666 34.2
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 4.2e-37 162.2 691 30.5
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 7.2e-37 161.4 459 44.0
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 2.3e-35 156.4 662 34.7
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 5.1e-35 155.2 695 32.8
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.5e-34 153.7 263 55.5
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 3.3e-34 152.5 712 34.0
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 2.8e-33 149.4 846 31.6
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 9.1e-32 144.4 693 34.6
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.9e-29 136.7 535 30.8
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.1e-28 133.3 668 32.0
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.7e-28 132.9 254 38.2
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 4.7e-28 132.1 720 29.3
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 8.8e-27 127.9 675 32.6
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 1.1e-26 127.5 501 32.3
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.5e-26 127.1 423 35.0
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.1e-24 120.9 740 31.6
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.5e-21 110.5 189 41.8
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.2e-21 109.4 456 30.5
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 1.2e-20 107.5 736 30.7
Lj1A890T51 Lonicera japonica HOM05D004836 ORTHO05D005150 6.1e-20 105.1 1011 22.9
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 6.7e-19 101.7 67 77.6
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.1e-18 100.9 733 27.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 9.7e-18 97.8 75 62.7
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.7e-17 97.1 65 64.6
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.6e-15 89.7 73 58.9
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 1.7e-14 87.0 388 29.6
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.5e-14 84.7 351 25.6
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 2.5e-13 83.2 247 30.8
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 6.1e-12 78.6 61 57.4
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 4.0e-11 75.9 202 35.6
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.0e-11 75.9 83 61.4
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.5e-10 73.9 204 31.9
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 2.0e-10 73.6 60 61.7
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 4.4e-10 72.4 237 35.0
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.7e-10 72.0 284 27.1
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 2.2e-09 70.1 269 35.3
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 3.7e-09 69.3 129 37.2
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 8.3e-09 68.2 550 27.8
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.4e-08 67.4 45 71.1
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.1e-08 66.2 80 48.8
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 4.1e-08 65.9 59 66.1
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 3.8e-06 59.3 78 37.2
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 5.0e-06 58.9 69 47.8
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 6.5e-06 58.5 183 31.7


User provided reference genes

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