Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007400g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 8.7e-76 287.0 152 100.0
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.4e-65 252.3 186 76.9
CAN.G1470.9 Capsicum annuum HOM05D000533 ORTHO05D002807 7.6e-64 247.3 186 75.8
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 1.3e-63 246.5 186 75.8
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.3e-63 246.5 182 76.9
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.3e-63 246.5 182 76.9
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 1.3e-63 246.5 182 76.9
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 5.5e-62 241.1 186 74.2
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 1.8e-60 236.1 186 73.1
EL10As15g24097 Beta vulgaris HOM05D000533 ORTHO05D002807 6.3e-58 227.6 187 69.5
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.1e-57 224.9 187 69.0
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 4.1e-57 224.9 187 69.0
Ah.10g027030 Amaranthus hybridus HOM05D000533 ORTHO05D002807 1.2e-56 223.4 187 68.4
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.0e-56 222.6 187 66.8
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.0e-56 222.6 187 66.8
EL10Ac6g14288 Beta vulgaris HOM05D000533 ORTHO05D002807 4.5e-56 221.5 182 69.2
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 1.0e-55 220.3 187 67.9
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 1.7e-55 219.5 183 67.2
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.9e-55 218.8 182 68.7
MELO3C027055.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.8e-55 218.4 187 65.8
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 8.5e-55 217.2 187 65.2
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 8.5e-55 217.2 187 65.2
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 8.5e-55 217.2 182 68.7
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 8.5e-55 217.2 182 67.0
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 8.5e-55 217.2 182 67.0
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 9.4e-54 213.8 187 64.7
arahy.Tifrunner.gnm1.ann1.510BCU Arachis hypogaea HOM05D000533 ORTHO05D002807 1.2e-53 213.4 183 65.0
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 1.2e-53 213.4 179 68.2
Nn064s42206 Nelumbo nucifera HOM05D000533 ORTHO05D002807 2.7e-53 212.2 186 65.1
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.7e-53 212.2 182 64.8
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-53 211.8 179 68.2
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 3.6e-53 211.8 184 65.2
C05p53830 Brassica napus HOM05D000533 ORTHO05D002807 4.6e-53 211.5 184 64.7
Psat4g172360 Pisum sativum HOM05D000533 ORTHO05D002807 1.0e-52 210.3 187 63.6
FAN01G2990 Fragaria x ananassa HOM05D000533 ORTHO05D002807 1.4e-52 209.9 179 67.6
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 1.4e-52 209.9 184 63.6
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 1.4e-52 209.9 184 63.6
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 1.4e-52 209.9 182 66.5
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.8e-52 209.5 181 64.6
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.8e-52 209.5 181 64.6
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.8e-52 209.5 181 64.6
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 2.3e-52 209.1 182 65.4
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 2.3e-52 209.1 182 65.4
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 2.3e-52 209.1 182 65.4
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 2.3e-52 209.1 182 65.4
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 3.0e-52 208.8 181 65.7
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 3.9e-52 208.4 179 65.9
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 3.9e-52 208.4 179 65.9
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 5.1e-52 208.0 184 65.2
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 5.1e-52 208.0 184 65.2
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 8.8e-52 207.2 179 65.4
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.1e-51 206.8 181 64.1
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.1e-51 206.8 181 64.1
BolSC46t60955H Brassica oleracea HOM05D000533 ORTHO05D002807 1.1e-51 206.8 181 64.1
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.1e-51 206.8 181 64.1
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 4.4e-51 204.9 181 63.5
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 7.4e-51 204.1 182 64.3
RcHm_v2.0_Chr3g0470801 Rosa chinensis HOM05D000533 ORTHO05D002807 7.4e-51 204.1 188 63.8
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 1.8e-49 199.5 187 63.1
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 3.4e-48 195.3 182 62.1
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 1.3e-47 193.4 168 66.1
CAN.G127.11 Capsicum annuum HOM05D000533 ORTHO05D002807 2.2e-47 192.6 160 70.6
CAN.G965.4 Capsicum annuum HOM05D000533 ORTHO05D002807 3.8e-47 191.8 159 71.1
Nitab4.5_0006502g0040 Nicotiana tabacum HOM05D000533 ORTHO05D002807 6.5e-47 191.0 159 71.1
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.4e-46 189.9 118 85.6
Potri.013G074800 Populus trichocarpa HOM05D000533 ORTHO05D002807 1.9e-46 189.5 177 62.7
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 3.2e-46 188.7 118 85.6
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.2e-46 187.6 118 84.7
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.2e-46 187.6 118 84.7
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 2.1e-45 186.0 118 84.7
Solyc11g021233.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 6.1e-45 184.5 179 62.6
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.4e-44 183.3 144 70.1
CAN.G30.8 Capsicum annuum HOM05D000533 ORTHO05D002807 2.3e-44 182.6 161 66.5
SEGI_20811 Sequoiadendron giganteum HOM05D000533 ORTHO05D002807 3.0e-44 182.2 182 57.1
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 5.2e-44 181.4 118 80.5
Psat6g182640 Pisum sativum HOM05D000533 ORTHO05D002807 1.1e-43 180.3 118 80.5
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 1.5e-43 179.9 117 82.1
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 2.0e-43 179.5 176 60.2
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 4.4e-43 178.3 118 79.7
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 4.4e-43 178.3 228 49.1
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 2.2e-42 176.0 110 85.5
BraSC59t46529Z Brassica rapa HOM05D000533 ORTHO05D002807 2.8e-42 175.6 183 57.9
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.7e-42 175.3 162 64.2
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 3.7e-42 175.3 118 78.8
Hund28342 Selenicereus undatus HOM05D000533 ORTHO05D002807 4.8e-42 174.9 152 67.8
Hund29093 Selenicereus undatus HOM05D000533 ORTHO05D002807 4.8e-42 174.9 152 67.8
Hund30926 Selenicereus undatus HOM05D000533 ORTHO05D002807 4.8e-42 174.9 152 67.8
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.1e-41 173.7 170 60.0
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 1.4e-41 173.3 182 56.6
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 5.3e-41 171.4 118 78.8
Gohir.D06G147033 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.2e-40 170.2 118 77.1
Sopen02g002710 Solanum pennellii HOM05D000533 ORTHO05D002807 2.0e-40 169.5 158 65.8
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 7.7e-40 167.5 158 61.4
Nitab4.5_0000660g0060 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.9e-39 165.6 154 64.3
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 6.5e-39 164.5 185 55.7
Solyc02g011800.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.5e-39 164.1 136 70.6
Gohir.A06G090050 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.1e-38 163.7 110 76.4
PGSC0003DMG402008783 Solanum tuberosum HOM05D000533 ORTHO05D002807 4.2e-38 161.8 135 69.6
Psat0s411g0120 Pisum sativum HOM05D000533 ORTHO05D002807 5.5e-38 161.4 160 56.2
Gorai.003G091000 Gossypium raimondii HOM05D000533 ORTHO05D002807 7.2e-38 161.0 119 71.4
Gorai.005G106600 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.2e-37 160.2 182 56.0
Gohir.A01G139542 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.6e-37 159.8 182 54.9
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.7e-37 159.1 118 73.7
HanXRQChr17g0557741 Helianthus annuus HOM05D000533 ORTHO05D002807 6.7e-36 154.5 152 61.8
Gohir.D02G093940 Gossypium hirsutum HOM05D000533 ORTHO05D002807 5.3e-33 144.8 182 53.3
Medtr3g113820 Medicago truncatula HOM05D000533 ORTHO05D002807 2.7e-32 142.5 174 52.9
Nn7g37744 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.5e-32 142.1 93 80.6
Nitab4.5_0007979g0100 Nicotiana tabacum HOM05D000533 ORTHO05D002807 2.2e-31 139.4 80 92.5
BolSC45t60906H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-30 136.0 151 53.6
Gorai.009G398900 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.2e-30 135.6 125 62.4
MELO3C031836.2 Cucumis melo HOM05D000533 ORTHO05D002807 9.4e-30 134.0 107 68.2
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 3.6e-29 132.1 115 63.5
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 3.1e-25 119.0 115 60.0
BraSC25t45913Z Brassica rapa HOM05D000533 ORTHO05D002807 2.0e-24 116.3 128 53.9
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 2.7e-24 115.9 111 56.8
Psat1g104960 Pisum sativum HOM05D000533 ORTHO05D002807 2.2e-23 112.8 144 45.8
BolC2t10600H Brassica oleracea HOM05D000533 ORTHO05D002807 2.9e-23 112.5 128 52.3
FAN09G0092 Fragaria x ananassa HOM05D000107 ORTHO05D002484 2.9e-23 112.5 81 76.5
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 6.5e-23 111.3 130 56.2
TPR.G37210 Trifolium pratense HOM05D000533 ORTHO05D002807 6.5e-23 111.3 73 76.7
C02p28820 Brassica napus HOM05D000533 ORTHO05D002807 1.5e-22 110.2 128 51.6
BolC2t08927H Brassica oleracea HOM05D000533 ORTHO05D002807 1.5e-22 110.2 128 51.6
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.5e-22 109.4 146 50.0
Psat0s1586g0320 Pisum sativum HOM05D000533 ORTHO05D002807 1.3e-18 97.1 121 48.8
CAN.G262.8 Capsicum annuum HOM05D000533 ORTHO05D002807 2.8e-18 95.9 105 59.0
Oeu029191.1 Olea europaea HOM05D000533 ORTHO05D002807 3.7e-18 95.5 140 44.3
Nitab4.5_0006409g0090 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.4e-17 93.6 89 62.9
Lj2C1229T2 Lonicera japonica HOM05D000533 ORTHO05D002807 1.6e-16 90.1 107 51.4
Solyc07g032420.3 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.6e-16 90.1 152 43.4
TAR625G0707 Trochodendron aralioides HOM05D000533 ORTHO05D006151 1.6e-16 90.1 116 49.1
Mapoly0167s0016 Marchantia polymorpha HOM05D000533 ORTHO05D002807 8.6e-15 84.3 52 80.8
BolC7t43857H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-12 77.0 40 95.0
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-12 77.0 40 95.0
BolSC37t60796H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-12 77.0 40 95.0
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 1.4e-12 77.0 40 95.0
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 1.4e-12 77.0 40 95.0
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 1.4e-12 77.0 114 35.1
Pp3c11_850 Physcomitrium patens HOM05D000533 ORTHO05D002807 1.4e-12 77.0 120 35.0
TPR.G9467 Trifolium pratense HOM05D000533 ORTHO05D002807 1.4e-12 77.0 71 62.0
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 1.8e-12 76.6 121 46.3
SGA_v2.0_scaffold150G36657 Striga asiatica HOM05D000533 ORTHO05D002807 3.0e-12 75.9 136 41.2
BolC2t10614H Brassica oleracea HOM05D000533 ORTHO05D002807 1.2e-11 73.9 104 45.2
Gohir.D11G339850 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.2e-11 73.9 101 45.5
Gorai.007G369400 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.5e-11 73.6 101 45.5
Lsat_1_v5_gn_1_58461 Lactuca sativa HOM05D000533 ORTHO05D002807 5.7e-11 71.6 114 45.6
Nn8g40522 Nelumbo nucifera HOM05D000533 ORTHO05D002807 7.5e-11 71.2 41 87.8
THA.LOC104820711 Tarenaya hassleriana HOM05D000533 ORTHO05D002807 4.9e-10 68.6 100 35.0
Nitab4.5_0000843g0030 Nicotiana tabacum HOM05D000533 ORTHO05D002807 3.2e-09 65.9 83 54.2
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 3.5e-08 62.4 65 56.9
HanXRQChr01g0020051 Helianthus annuus HOM05D000533 ORTHO05D002807 1.0e-07 60.8 39 74.4
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 5.0e-07 58.5 68 50.0
Lsat_1_v5_gn_8_103040 Lactuca sativa HOM05D000533 ORTHO05D002807 6.6e-07 58.2 60 58.3


User provided reference genes

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