Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007393g0020 Nicotiana tabacum HOM05D012928 ORTHO05D003355 0.0e+00 2369.3 1243 100.0
Nitab4.5_0000041g0190 Nicotiana tabacum HOM05D012928 ORTHO05D003355 0.0e+00 2043.5 1334 84.3
PGSC0003DMG400010741 Solanum tuberosum HOM05D012928 ORTHO05D003355 0.0e+00 1426.0 1259 67.5
Sopen05g009140 Solanum pennellii HOM05D012928 ORTHO05D003355 0.0e+00 1318.1 1269 63.4
Solyc05g014130.3 Solanum lycopersicum HOM05D012928 ORTHO05D003355 0.0e+00 1304.7 1269 62.9
Peaxi162Scf00128g00645 Petunia axillaris HOM05D012928 ORTHO05D003355 2.9e-270 936.0 1439 45.8
CAN.G650.29 Capsicum annuum HOM05D012928 ORTHO05D003355 6.7e-267 924.9 1402 46.8
Nitab4.5_0011762g0010 Nicotiana tabacum HOM05D012928 ORTHO05D003355 4.9e-124 450.3 434 62.9
Nitab4.5_0001246g0040 Nicotiana tabacum HOM05D012928 ORTHO05D003355 1.0e-81 309.7 439 49.7
Cc11_g16250 Coffea canephora HOM05D012928 ORTHO05D003355 2.6e-40 172.2 1383 26.6
Oeu038657.1 Olea europaea HOM05D012928 ORTHO05D003355 1.4e-33 149.8 1306 26.0
Lj6A818T39 Lonicera japonica HOM05D005863 ORTHO05D003355 5.2e-33 147.9 1323 25.8
TAR629G1344 Trochodendron aralioides HOM05D005863 ORTHO05D003355 3.7e-31 141.7 1459 24.7
vmacro01106 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 1.4e-30 139.8 1374 23.6
Dinv14763 Davidia involucrata HOM05D005863 ORTHO05D003355 1.3e-28 133.3 104 63.5
Duzib251G0242 Durio zibethinus HOM05D005863 ORTHO05D003355 5.0e-28 131.3 91 67.0
COL.COLO4_23547 Corchorus olitorius HOM05D005863 ORTHO05D003355 2.5e-27 129.0 91 64.8
Duzib268G1590 Durio zibethinus HOM05D005863 ORTHO05D003355 1.2e-26 126.7 91 63.7
Thecc.02G268600 Theobroma cacao HOM05D005863 ORTHO05D003355 1.2e-26 126.7 421 31.4
Migut.K00651 Erythranthe guttata HOM05D005863 ORTHO05D003355 1.0e-25 123.6 339 34.5
Gorai.005G174200 Gossypium raimondii HOM05D005863 ORTHO05D003355 2.3e-25 122.5 90 62.2
CiPaw.11G070600 Carya illinoinensis HOM05D005863 ORTHO05D003355 8.8e-25 120.6 386 31.6
QL03p055923 Quercus lobata HOM05D005863 ORTHO05D003355 2.0e-24 119.4 1397 22.3
Ciclev10030561m.g Citrus clementina HOM05D005863 ORTHO05D003355 2.6e-24 119.0 86 65.1
TWI36G0003 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 5.7e-24 117.9 95 55.8
Lsat_1_v5_gn_8_150460 Lactuca sativa HOM05D005863 ORTHO05D003355 9.8e-24 117.1 87 66.7
Psat5g094240 Pisum sativum HOM05D013281 ORTHO05D003355 9.8e-24 117.1 87 59.8
Rhsim12G0037600 Rhododendron simsii HOM05D005863 ORTHO05D003355 9.8e-24 117.1 146 49.3
GSVIVG01000596001 Vitis vinifera HOM05D005863 ORTHO05D003355 4.8e-23 114.8 1339 23.5
MSTRG.544 Avicennia marina HOM05D005863 ORTHO05D003355 8.3e-23 114.0 101 55.4
PGR031G1574 Punica granatum HOM05D005863 ORTHO05D003355 2.4e-22 112.5 86 64.0
Haze_12305 Corylus avellana HOM05D005863 ORTHO05D003355 7.0e-22 110.9 1382 24.2
Nn4g22491 Nelumbo nucifera HOM05D005863 ORTHO05D003355 9.1e-22 110.5 1358 23.2
HanXRQChr01g0023571 Helianthus annuus HOM05D005863 ORTHO05D003355 1.6e-21 109.8 107 51.4
Aqoxy3G01339 Aquilegia oxysepala HOM05D005863 ORTHO05D003355 5.9e-21 107.8 95 53.7
CAN.G350.32 Capsicum annuum HOM05D012928 ORTHO05D003355 2.2e-20 105.9 107 59.8
ClCG08G017500 Citrullus lanatus HOM05D005863 ORTHO05D003355 3.8e-20 105.1 88 56.8
SGA_v2.0_scaffold124G33641 Striga asiatica HOM05D005863 ORTHO05D003355 5.0e-20 104.8 118 48.3
Potri.010G052200 Populus trichocarpa HOM05D005863 ORTHO05D003355 1.1e-19 103.6 1340 22.8
PGR102G1092 Punica granatum HOM05D005863 ORTHO05D003355 2.5e-19 102.4 1385 22.5
Manes.13G019100 Manihot esculenta HOM05D005863 ORTHO05D003355 4.2e-19 101.7 1332 22.4
Lalb_Chr11g0075601 Lupinus albus HOM05D005863 ORTHO05D003355 5.5e-19 101.3 85 56.5
HanXRQChr08g0208041 Helianthus annuus HOM05D005863 ORTHO05D003355 9.4e-19 100.5 94 52.1
PSO017G4976 Papaver somniferum HOM05D040514 ORTHO05D003355 1.6e-18 99.8 89 49.4
Sed0006554 Sechium edule HOM05D005863 ORTHO05D003355 1.6e-18 99.8 87 54.0
Sabra10G0018100 Salix brachista HOM05D005863 ORTHO05D003355 1.4e-17 96.7 1380 23.6
Lj4g0027725 Lotus japonicus HOM05D013281 ORTHO05D003355 1.8e-17 96.3 88 51.1
Sed0020016 Sechium edule HOM05D005863 ORTHO05D003355 2.3e-17 95.9 87 52.9
Prupe.1G239400 Prunus persica HOM05D005863 ORTHO05D017031 4.0e-17 95.1 83 54.2
Sp2g01280 Schrenkiella parvula HOM05D008497 ORTHO05D027096 4.0e-17 95.1 88 51.1
Sp7g05260 Schrenkiella parvula HOM05D008497 ORTHO05D003355 5.2e-17 94.7 96 46.9
AT5G37190 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 6.8e-17 94.4 173 32.4
MSTRG.7960 Avicennia marina HOM05D005863 ORTHO05D003355 2.0e-16 92.8 1325 23.0
VMungo1383G2020 Vigna mungo HOM05D013281 ORTHO05D003355 2.0e-16 92.8 82 53.7
AL7G45710 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 2.6e-16 92.4 106 44.3
AT4G00930 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.7e-16 91.3 97 44.3
Carub.0007s3238 Capsella rubella HOM05D008497 ORTHO05D003355 5.7e-16 91.3 93 46.2
Thhalv10023229m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 9.8e-16 90.5 90 45.6
DCAR_024069 Daucus carota HOM05D005863 ORTHO05D003355 1.3e-15 90.1 1451 22.5
BcaB07g31396 Brassica carinata HOM05D008497 ORTHO05D003355 2.2e-15 89.4 98 50.0
Sp7g04810 Schrenkiella parvula HOM05D008497 ORTHO05D003355 2.2e-15 89.4 82 52.4
arahy.Tifrunner.gnm1.ann1.R3FSDD Arachis hypogaea HOM05D015529 ORTHO05D015409 3.7e-15 88.6 221 33.0
Medtr3g086220 Medicago truncatula HOM05D013281 ORTHO05D003355 6.3e-15 87.8 673 22.3
Manes.12G018600 Manihot esculenta HOM05D005863 ORTHO05D003355 1.4e-14 86.7 1343 23.5
BcaC04g22481 Brassica carinata HOM05D008497 ORTHO05D003355 2.4e-14 85.9 98 48.0
ATR0751G078 Amborella trichopoda HOM05D005863 ORTHO05D003355 4.1e-14 85.1 81 48.1
BraA01t02635Z Brassica rapa HOM05D008497 ORTHO05D003355 9.2e-14 84.0 90 48.9
BcaC06g36075 Brassica carinata HOM05D008497 ORTHO05D003355 1.2e-13 83.6 246 30.5
C07p08170 Brassica napus HOM05D008497 ORTHO05D003355 1.2e-13 83.6 246 30.5
BolC7t41233H Brassica oleracea HOM05D008497 ORTHO05D003355 1.2e-13 83.6 246 30.5
C09p18810 Brassica napus HOM05D008497 ORTHO05D003355 1.6e-13 83.2 99 46.5
BolC9t54783H Brassica oleracea HOM05D008497 ORTHO05D003355 1.6e-13 83.2 99 46.5
CARHR215860 Cardamine hirsuta HOM05D008497 ORTHO05D003355 2.0e-13 82.8 263 25.5
ATR0824G200 Amborella trichopoda HOM05D005863 ORTHO05D003355 2.7e-13 82.4 429 24.0
A09p15560 Brassica napus HOM05D008497 ORTHO05D003355 2.7e-13 82.4 99 45.5
BraA09t37196Z Brassica rapa HOM05D008497 ORTHO05D003355 2.7e-13 82.4 99 45.5
PSO339G3984 Papaver somniferum HOM05D005863 ORTHO05D003355 2.7e-13 82.4 93 46.2
SalBow2G2700 Salvia bowleyana HOM05D005863 ORTHO05D003355 2.7e-13 82.4 1289 23.2
TWI38G1195 Tripterygium wilfordii HOM05D005863 ORTHO05D003355 2.7e-13 82.4 85 44.7
Atru.chr11.2201 Acer truncatum HOM05D005863 ORTHO05D003355 3.5e-13 82.0 1262 22.8
GSVIVG01014696001 Vitis vinifera HOM05D005863 ORTHO05D003355 3.5e-13 82.0 142 32.4
THA.LOC104825539 Tarenaya hassleriana HOM05D005863 ORTHO05D003355 4.5e-13 81.6 329 25.5
PSO384G2180 Papaver somniferum HOM05D005863 ORTHO05D003355 1.0e-12 80.5 220 29.5
PSO384G3490 Papaver somniferum HOM05D005863 ORTHO05D003355 2.3e-12 79.3 82 41.5
Prupe.8G267500 Prunus persica HOM05D014719 ORTHO05D003355 2.3e-12 79.3 106 42.5
Ah.02g130420 Amaranthus hybridus HOM05D025851 ORTHO05D003355 2.9e-12 79.0 80 45.0
Glyma.18G011700 Glycine max HOM05D013281 ORTHO05D003355 2.9e-12 79.0 1274 21.9
Nn1g07525 Nelumbo nucifera HOM05D005863 ORTHO05D003355 2.9e-12 79.0 135 38.5
PSO339G2613 Papaver somniferum HOM05D005863 ORTHO05D003355 2.9e-12 79.0 81 42.0
Cpa.g.sc369.6 Carica papaya HOM05D005863 ORTHO05D003355 5.0e-12 78.2 1294 21.7
MBI14_g22553_MAGBIO Magnolia biondii HOM05D005863 ORTHO05D003355 5.0e-12 78.2 85 41.2
Potri.007G102500 Populus trichocarpa HOM05D005863 ORTHO05D003355 5.0e-12 78.2 83 41.0
RcHm_v2.0_Chr4g0432241 Rosa chinensis HOM05D005863 ORTHO05D017031 5.0e-12 78.2 83 51.8
BcaC02g10405 Brassica carinata HOM05D008497 ORTHO05D003355 6.6e-12 77.8 99 44.4
C04p29310 Brassica napus HOM05D008497 ORTHO05D003355 6.6e-12 77.8 99 44.4
Ciclev10008896m.g Citrus clementina HOM05D005863 ORTHO05D003355 6.6e-12 77.8 81 44.4
Sabra07G0084200 Salix brachista HOM05D005863 ORTHO05D003355 6.6e-12 77.8 79 43.0
TAR629G0397 Trochodendron aralioides HOM05D005863 ORTHO05D003355 6.6e-12 77.8 81 43.2
Actinidia37152 Actinidia chinensis HOM05D005863 ORTHO05D003355 8.6e-12 77.4 83 43.4
Ah.03g133620 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.1e-11 77.0 80 43.8
BolC4t24461H Brassica oleracea HOM05D008497 ORTHO05D003355 1.1e-11 77.0 102 41.2
Atru.chr2.3697 Acer truncatum HOM05D005863 ORTHO05D003355 1.5e-11 76.6 80 42.5
Carub.0003s3440 Capsella rubella HOM05D008497 ORTHO05D003355 1.5e-11 76.6 310 25.8
AUR62024201 Chenopodium quinoa HOM05D025851 ORTHO05D044019 1.5e-11 76.6 80 42.5
CsaV3_2G025110 Cucumis sativus L. HOM05D005863 ORTHO05D003355 2.5e-11 75.9 1270 22.2
RcHm_v2.0_Chr3g0496661 Rosa chinensis HOM05D014719 ORTHO05D003355 2.5e-11 75.9 104 38.5
arahy.Tifrunner.gnm1.ann1.5I91Y5 Arachis hypogaea HOM05D015529 ORTHO05D015409 3.3e-11 75.5 238 29.8
vmacro09646 Vaccinium macrocarpon HOM05D005863 ORTHO05D003355 3.3e-11 75.5 83 41.0
HanXRQChr11g0334111 Helianthus annuus HOM05D005863 ORTHO05D003355 4.3e-11 75.1 177 28.8
MD16G1107000 Malus domestica HOM05D005863 ORTHO05D017031 4.3e-11 75.1 1321 22.9
AL1G64360 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 5.6e-11 74.7 203 31.0
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 5.6e-11 74.7 167 29.9
Glyma.11G245500 Glycine max HOM05D013281 ORTHO05D003355 9.5e-11 73.9 1273 20.8
AT2G01800 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.2e-10 73.6 81 45.7
Rhsim04G0012300 Rhododendron simsii HOM05D005863 ORTHO05D003355 1.6e-10 73.2 83 39.8
Sc14g0008880 Simmondsia chinensis HOM05D005863 ORTHO05D003355 1.6e-10 73.2 1285 21.9
AT4G00920 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 2.8e-10 72.4 90 44.4
SEGI_35034 Sequoiadendron giganteum HOM05D005863 ORTHO05D003355 4.7e-10 71.6 85 43.5
Aa31sc26G130 Aethionema arabicum HOM05D008497 ORTHO05D003355 8.0e-10 70.9 94 40.4
Hma1.2p1_2829F.1_g329210 Hydrangea macrophylla HOM05D005863 ORTHO05D003355 8.0e-10 70.9 95 36.8
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.0e-09 70.5 81 38.3
QL08p003943 Quercus lobata HOM05D014719 ORTHO05D003355 1.0e-09 70.5 81 40.7
AT2G02770 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.4e-09 70.1 179 29.6
Cpa.g.sc12.119 Carica papaya HOM05D005863 ORTHO05D003355 1.4e-09 70.1 80 38.8
THA.LOC104822728 Tarenaya hassleriana HOM05D012516 ORTHO05D003355 1.4e-09 70.1 81 37.0
Aa31LG7G9560 Aethionema arabicum HOM05D008497 ORTHO05D003355 1.8e-09 69.7 80 42.5
Thecc.07G012300 Theobroma cacao HOM05D005863 ORTHO05D003355 1.8e-09 69.7 81 40.7
unitig_899.g14722 Utricularia gibba HOM05D012928 ORTHO05D003355 1.8e-09 69.7 66 45.5
FAN17G1935 Fragaria x ananassa HOM05D005863 ORTHO05D017031 2.3e-09 69.3 104 42.3
Gohir.A13G132200 Gossypium hirsutum HOM05D005863 ORTHO05D003355 4.0e-09 68.6 81 39.5
FAN22G1084 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.2e-09 68.2 89 46.1
FAN22G1483 Fragaria x ananassa HOM05D005863 ORTHO05D017031 5.2e-09 68.2 89 46.1
Gohir.D13G135600 Gossypium hirsutum HOM05D005863 ORTHO05D003355 5.2e-09 68.2 83 39.8
Lsat_1_v5_gn_7_114301 Lactuca sativa HOM05D005863 ORTHO05D003355 5.2e-09 68.2 81 37.0
Nitab4.5_0001159g0240 Nicotiana tabacum HOM05D005863 ORTHO05D003355 5.2e-09 68.2 101 33.7
arahy.Tifrunner.gnm1.ann1.9BU9L2 Arachis hypogaea HOM05D005863 ORTHO05D003355 8.9e-09 67.4 94 37.2
Gorai.013G152000 Gossypium raimondii HOM05D005863 ORTHO05D003355 1.2e-08 67.0 81 39.5
MD13G1106900 Malus domestica HOM05D005863 ORTHO05D017031 1.2e-08 67.0 1289 23.1
Lj6g0020676 Lotus japonicus HOM05D005863 ORTHO05D003355 1.5e-08 66.6 80 40.0
arahy.Tifrunner.gnm1.ann1.11ED70 Arachis hypogaea HOM05D005863 ORTHO05D003355 2.0e-08 66.2 80 38.8
Cc05_g15010 Coffea canephora HOM05D005863 ORTHO05D003355 2.0e-08 66.2 79 39.2
PGR031G0790 Punica granatum HOM05D005863 ORTHO05D003355 2.0e-08 66.2 85 36.5
Carub.0001s4470 Capsella rubella HOM05D008497 ORTHO05D003355 2.6e-08 65.9 171 33.3
Thhalv10028078m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 2.6e-08 65.9 96 37.5
Migut.A01086 Erythranthe guttata HOM05D005863 ORTHO05D003355 3.4e-08 65.5 129 33.3
Peaxi162Scf01762g00013 Petunia axillaris HOM05D005863 ORTHO05D003355 3.4e-08 65.5 89 38.2
Aa31sc46G40 Aethionema arabicum HOM05D005863 ORTHO05D003355 4.4e-08 65.1 81 35.8
AL1G63810 Arabidopsis lyrata HOM05D008497 ORTHO05D003355 4.4e-08 65.1 92 38.0
HPP92_003025 Vanilla planifolia HOM05D048574 ORTHO05D003355 4.4e-08 65.1 83 41.0
HPP92_027528 Vanilla planifolia HOM05D005863 ORTHO05D003355 4.4e-08 65.1 83 41.0
CANSAT78G1634 Cannabis sativa HOM05D005863 ORTHO05D003355 5.7e-08 64.7 83 34.9
Zm00001eb079300 Zea mays HOM05D028546 ORTHO05D030325 5.7e-08 64.7 87 39.1
arahy.Tifrunner.gnm1.ann1.Q7CAJS Arachis hypogaea HOM05D015529 ORTHO05D015409 1.7e-07 63.2 237 30.0
arahy.Tifrunner.gnm1.ann1.ZHX2UW Arachis hypogaea HOM05D015529 ORTHO05D015409 1.7e-07 63.2 237 30.0
THA.LOC104825538 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.2e-07 62.8 72 41.7
Sc16g0008130 Simmondsia chinensis HOM05D005863 ORTHO05D003355 2.9e-07 62.4 82 39.0
Sp1g41465 Schrenkiella parvula HOM05D012516 ORTHO05D003355 3.7e-07 62.0 81 34.6
Rhsim10G0199400 Rhododendron simsii HOM05D005863 ORTHO05D003355 8.3e-07 60.8 61 41.0
TPR.G14234 Trifolium pratense HOM05D013281 ORTHO05D003355 8.3e-07 60.8 1315 20.9
TPR.G1700 Trifolium pratense HOM05D005863 ORTHO05D003355 8.3e-07 60.8 81 35.8
Actinidia30696 Actinidia chinensis HOM05D005863 ORTHO05D003355 1.1e-06 60.5 1297 21.8
CsaV3_7G011440 Cucumis sativus L. HOM05D031146 ORTHO05D003355 1.1e-06 60.5 115 31.3
Eucgr.F03684 Eucalyptus grandis HOM05D005863 ORTHO05D003355 1.1e-06 60.5 72 37.5
Thhalv10027990m.g Eutrema salsugineum HOM05D008497 ORTHO05D003355 1.1e-06 60.5 91 33.0
Hund23103 Selenicereus undatus HOM05D005863 ORTHO05D003355 1.1e-06 60.5 79 38.0
BcaB02g10795 Brassica carinata HOM05D012516 ORTHO05D003355 1.4e-06 60.1 83 34.9
Lalb_Chr18g0052131 Lupinus albus HOM05D005863 ORTHO05D003355 1.4e-06 60.1 80 37.5
Medtr2g036070 Medicago truncatula HOM05D005863 ORTHO05D003355 1.4e-06 60.1 80 36.2
Sp7g04860 Schrenkiella parvula HOM05D008497 ORTHO05D003355 1.4e-06 60.1 81 38.3
FvH4_1g28370 Fragaria vesca HOM05D014719 ORTHO05D003355 2.4e-06 59.3 81 38.3
THA.LOC104808433 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.4e-06 59.3 72 37.5
THA.LOC104825537 Tarenaya hassleriana HOM05D008497 ORTHO05D003355 2.4e-06 59.3 72 37.5
Aa31LG10G330 Aethionema arabicum HOM05D000747 ORTHO05D001683 3.2e-06 58.9 112 28.6
Aa31sc26G90 Aethionema arabicum HOM05D005863 ORTHO05D003355 4.1e-06 58.5 81 33.3
Nitab4.5_0006876g0020 Nicotiana tabacum HOM05D005863 ORTHO05D003355 4.1e-06 58.5 100 31.0
Rhsim10G0199200 Rhododendron simsii HOM05D005863 ORTHO05D003355 4.1e-06 58.5 61 37.7
AL1G63990 Arabidopsis lyrata HOM05D012516 ORTHO05D003355 5.4e-06 58.2 188 23.9
Medtr2g036080 Medicago truncatula HOM05D007390 ORTHO05D009114 7.0e-06 57.8 75 37.3
Dinv10342 Davidia involucrata HOM05D005863 ORTHO05D003355 9.2e-06 57.4 50 42.0


User provided reference genes

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