Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007374g0020 Nicotiana tabacum HOM05D000300 ORTHO05D008505 3.5e-126 455.7 371 100.0
Peaxi162Scf00000g00412 Petunia axillaris HOM05D000300 ORTHO05D008505 5.4e-79 298.9 221 74.2
PGSC0003DMG400015358 Solanum tuberosum HOM05D000300 ORTHO05D008505 3.0e-77 293.1 221 72.4
Dinv04313 Davidia involucrata HOM05D000300 ORTHO05D008505 6.4e-72 275.4 221 68.3
Duzib213G0972 Durio zibethinus HOM05D000300 ORTHO05D008505 1.1e-71 274.6 221 67.0
Oeu060546.1 Olea europaea HOM05D000300 ORTHO05D008505 3.2e-71 273.1 221 68.3
Hma1.2p1_1618F.1_g293900 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 5.4e-71 272.3 221 67.0
QL08p020830 Quercus lobata HOM05D000300 ORTHO05D008505 5.4e-71 272.3 220 65.9
Thecc.07G080900 Theobroma cacao HOM05D000300 ORTHO05D008505 9.2e-71 271.6 221 65.6
MELO3C016520.2 Cucumis melo HOM05D000300 ORTHO05D008505 2.1e-70 270.4 221 67.9
Manes.03G111900 Manihot esculenta HOM05D000300 ORTHO05D008505 3.5e-70 269.6 221 65.6
ClCG10G006870 Citrullus lanatus HOM05D000300 ORTHO05D008505 4.6e-70 269.2 221 67.4
Potri.011G121000 Populus trichocarpa HOM05D000300 ORTHO05D008505 6.0e-70 268.9 221 66.5
CiPaw.11G167900 Carya illinoinensis HOM05D000300 ORTHO05D008505 1.3e-69 267.7 221 65.6
Gorai.009G390800 Gossypium raimondii HOM05D000300 ORTHO05D008505 1.3e-69 267.7 221 64.7
CsaV3_3G006220 Cucumis sativus L. HOM05D000300 ORTHO05D008505 1.7e-69 267.3 221 67.0
Cc05_g12170 Coffea canephora HOM05D000300 ORTHO05D000383 3.0e-69 266.5 221 67.0
Sabra11G0105000 Salix brachista HOM05D000300 ORTHO05D008505 6.6e-69 265.4 222 67.1
Prupe.4G183600 Prunus persica HOM05D000300 ORTHO05D008505 1.1e-68 264.6 217 65.9
TWI38G1039 Tripterygium wilfordii HOM05D000300 ORTHO05D008505 1.5e-68 264.2 221 65.6
CSS0002162 Camellia sinensis var. sinensis HOM05D000300 ORTHO05D008505 1.9e-68 263.8 221 64.7
RcHm_v2.0_Chr5g0033901 Rosa chinensis HOM05D000300 ORTHO05D008505 1.9e-68 263.8 217 65.9
Gohir.A04G028900 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.3e-68 263.1 221 64.3
Gohir.D05G358300 Gossypium hirsutum HOM05D000300 ORTHO05D008505 3.3e-68 263.1 221 64.3
Solyc12g013790.3 Solanum lycopersicum HOM05D000300 ORTHO05D008505 5.6e-68 262.3 221 66.1
Sopen12g007100 Solanum pennellii HOM05D000300 ORTHO05D008505 7.3e-68 261.9 220 66.4
Nn1g06576 Nelumbo nucifera HOM05D000300 ORTHO05D008505 9.6e-68 261.5 221 65.6
VMungo1080G0699 Vigna mungo HOM05D000300 ORTHO05D008505 1.2e-67 261.2 217 65.9
Ciclev10007647m.g Citrus clementina HOM05D000300 ORTHO05D000383 1.6e-67 260.8 221 65.6
MSTRG.6839 Avicennia marina HOM05D000300 ORTHO05D008505 2.1e-67 260.4 221 65.6
FvH4_3g20100 Fragaria vesca HOM05D000300 ORTHO05D008505 2.8e-67 260.0 217 64.5
FAN11G2262 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.8e-67 260.0 217 64.5
vmacro11851 Vaccinium macrocarpon HOM05D000300 ORTHO05D008505 2.8e-67 260.0 221 63.8
arahy.Tifrunner.gnm1.ann1.UT5NS3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.6e-67 259.6 221 64.7
arahy.Tifrunner.gnm1.ann1.Z7GNQ3 Arachis hypogaea HOM05D000300 ORTHO05D008505 3.6e-67 259.6 221 64.7
Glyma.12G223300 Glycine max HOM05D000300 ORTHO05D008505 3.6e-67 259.6 217 65.0
Phvul.005G071500 Phaseolus vulgaris HOM05D000300 ORTHO05D008505 3.6e-67 259.6 217 65.4
FAN21G2789 Fragaria x ananassa HOM05D000300 ORTHO05D008505 6.2e-67 258.8 217 64.5
Psat3g101080 Pisum sativum HOM05D000300 ORTHO05D008505 6.2e-67 258.8 217 65.9
TPR.G38968 Trifolium pratense HOM05D000300 ORTHO05D008505 1.4e-66 257.7 217 65.4
Glyma.13G278100 Glycine max HOM05D000300 ORTHO05D008505 1.8e-66 257.3 214 65.0
MD11G1245300 Malus domestica HOM05D000300 ORTHO05D008505 1.8e-66 257.3 217 64.5
GSVIVG01014363001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.8e-66 257.3 220 64.5
Lalb_Chr20g0109791 Lupinus albus HOM05D000300 ORTHO05D008505 5.2e-66 255.8 217 65.0
MD03G1225800 Malus domestica HOM05D000300 ORTHO05D008505 6.9e-66 255.4 217 64.1
Lj3g0005060 Lotus japonicus HOM05D000300 ORTHO05D008505 1.2e-65 254.6 221 63.8
Aqoxy1G02483 Aquilegia oxysepala HOM05D000300 ORTHO05D008505 2.0e-65 253.8 220 63.6
Atru.chr2.2664 Acer truncatum HOM05D000300 ORTHO05D008505 4.4e-65 252.7 221 62.9
Medtr2g079460 Medicago truncatula HOM05D000300 ORTHO05D008505 5.8e-65 252.3 217 64.1
CANSAT56G2812 Cannabis sativa HOM05D000300 ORTHO05D008505 4.9e-64 249.2 221 62.0
Os04g0530300 Oryza sativa ssp. japonica HOM05D000300 ORTHO05D008505 4.9e-64 249.2 220 60.9
Cpa.g.sc80.49 Carica papaya HOM05D000300 ORTHO05D008505 6.4e-64 248.8 214 63.6
Migut.M00819 Erythranthe guttata HOM05D000300 ORTHO05D008505 3.2e-63 246.5 218 62.4
Aa31LG3G10120 Aethionema arabicum HOM05D000300 ORTHO05D008505 5.4e-63 245.7 222 60.8
THA.LOC104813391 Tarenaya hassleriana HOM05D000300 ORTHO05D008505 7.1e-63 245.4 221 61.1
Nitab4.5_0000662g0230 Nicotiana tabacum HOM05D000300 ORTHO05D008505 9.3e-63 245.0 242 60.7
Sc16g0006940 Simmondsia chinensis HOM05D000300 ORTHO05D008505 9.3e-63 245.0 219 62.1
Haze_09412 Corylus avellana HOM05D000300 ORTHO05D008505 3.5e-62 243.0 221 62.4
PSO675G9140 Papaver somniferum HOM05D000300 ORTHO05D008505 1.0e-61 241.5 221 60.6
SalBow7G1295 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.0e-61 241.5 218 61.9
SalBow7G3546 Salvia bowleyana HOM05D000300 ORTHO05D008505 1.0e-61 241.5 218 61.9
HPP92_025994 Vanilla planifolia HOM05D000300 ORTHO05D008505 3.0e-61 240.0 221 60.2
PSO541G3772 Papaver somniferum HOM05D000300 ORTHO05D008505 3.9e-61 239.6 221 60.2
DCAR_013093 Daucus carota HOM05D000300 ORTHO05D008505 6.6e-61 238.8 221 60.2
PGR031G2267 Punica granatum HOM05D000300 ORTHO05D008505 5.6e-60 235.7 221 59.7
Sp6g15870 Schrenkiella parvula HOM05D000300 ORTHO05D008505 9.6e-60 235.0 221 57.9
Thhalv10013922m.g Eutrema salsugineum HOM05D000300 ORTHO05D008505 2.1e-59 233.8 221 58.4
Hma1.2p1_1738F.1_g299980 Hydrangea macrophylla HOM05D000300 ORTHO05D008505 2.1e-59 233.8 221 60.2
SGA_v2.0_scaffold34G13828 Striga asiatica HOM05D000300 ORTHO05D008505 2.1e-59 233.8 254 55.9
AL8G28840 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.7
AT5G53800 Arabidopsis thaliana HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.7
BcaC04g20418 Brassica carinata HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.3
A10p11170 Brassica napus HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.3
C09p43740 Brassica napus HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.3
BolC9t57259H Brassica oleracea HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.3
BraA10t43209Z Brassica rapa HOM05D000300 ORTHO05D008505 2.4e-58 230.3 220 57.3
BcaB08g35739 Brassica carinata HOM05D000300 ORTHO05D008505 4.0e-58 229.6 220 56.8
Carub.0008s1409 Capsella rubella HOM05D000300 ORTHO05D008505 5.3e-58 229.2 220 57.7
ATR0680G062 Amborella trichopoda HOM05D000300 ORTHO05D008505 6.9e-58 228.8 218 60.6
ECA240G3136 Erigeron canadensis HOM05D000300 ORTHO05D008505 1.3e-56 224.6 218 57.8
Sed0021435 Sechium edule HOM05D000300 ORTHO05D008505 2.2e-56 223.8 221 58.8
Lsat_1_v5_gn_9_97040 Lactuca sativa HOM05D000300 ORTHO05D008505 7.1e-55 218.8 219 56.6
Zm00001eb075780 Zea mays HOM05D000300 ORTHO05D008505 9.3e-55 218.4 205 58.5
Rhsim06G0197200 Rhododendron simsii HOM05D000300 ORTHO05D008505 1.6e-54 217.6 199 61.3
SEGI_35024 Sequoiadendron giganteum HOM05D000300 ORTHO05D008505 3.5e-54 216.5 216 53.2
Ca_01834_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008505 1.3e-53 214.5 194 63.4
Hund02219 Selenicereus undatus HOM05D000300 ORTHO05D008505 1.3e-53 214.5 220 55.5
Mapoly0026s0140 Marchantia polymorpha HOM05D000300 ORTHO05D008505 1.1e-52 211.5 212 55.2
unitig_747.g21571 Utricularia gibba HOM05D000300 ORTHO05D008505 2.5e-52 210.3 209 59.8
Ah.04g164930 Amaranthus hybridus HOM05D000300 ORTHO05D008505 6.9e-50 202.2 217 52.5
MD11G1245600 Malus domestica HOM05D000300 ORTHO05D008505 1.2e-49 201.4 197 59.4
CDE02G0965 Ceratophyllum demersum HOM05D000300 ORTHO05D008505 1.7e-48 197.6 199 56.3
HanXRQChr03g0078531 Helianthus annuus HOM05D000300 ORTHO05D008505 1.2e-46 191.4 205 53.7
AagrBONN_evm.TU.Sc2ySwM_340.171 Anthoceros agrestis HOM05D000300 ORTHO05D008505 4.6e-46 189.5 213 49.8
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.0e-45 188.3 147 64.6
Pp3c25_13690 Physcomitrium patens HOM05D000300 ORTHO05D008505 1.0e-45 188.3 218 48.6
SMO367G0821 Selaginella moellendorffii HOM05D000300 ORTHO05D008505 3.1e-42 176.8 198 51.5
FAN16G2347 Fragaria x ananassa HOM05D000300 ORTHO05D008505 2.5e-39 167.2 148 63.5
Actinidia12817 Actinidia chinensis HOM05D000300 ORTHO05D008505 2.7e-30 137.1 88 73.9
AUR62029376 Chenopodium quinoa HOM05D000300 ORTHO05D008505 9.7e-28 128.6 141 53.9
AUR62034261 Chenopodium quinoa HOM05D000300 ORTHO05D008505 9.7e-28 128.6 141 53.9
COL.COLO4_09413 Corchorus olitorius HOM05D000300 ORTHO05D008505 2.2e-27 127.5 126 61.1
FAN25G2371 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.7e-25 119.0 81 70.4
MD11G1132100 Malus domestica HOM05D000300 ORTHO05D008505 3.8e-24 116.7 83 66.3
EL10Ac4g08146 Beta vulgaris HOM05D000300 ORTHO05D008505 2.5e-23 114.0 140 49.3
Nn1g04059 Nelumbo nucifera HOM05D000300 ORTHO05D008505 7.2e-23 112.5 111 55.0
CBR_g12199 Chara braunii HOM05D000300 ORTHO05D008505 4.8e-19 99.8 81 56.8
Cre03.g176050 Chlamydomonas reinhardtii HOM05D000300 ORTHO05D008505 4.8e-19 99.8 211 33.2
MCO10G111 Micromonas commoda HOM05D000300 ORTHO05D008505 1.1e-18 98.6 218 32.1
FAN25G3258 Fragaria x ananassa HOM05D000300 ORTHO05D008505 7.7e-17 92.4 121 46.3
GSVIVG01021702001 Vitis vinifera HOM05D000300 ORTHO05D008505 4.2e-15 86.7 100 55.0
AL8G13240 Arabidopsis lyrata HOM05D000300 ORTHO05D008505 6.1e-14 82.8 63 68.3
TAR626G1261 Trochodendron aralioides HOM05D000300 ORTHO05D008505 1.8e-13 81.3 102 52.9
GSVIVG01021454001 Vitis vinifera HOM05D000300 ORTHO05D008505 1.8e-13 81.3 111 50.5
GSVIVG01014364001 Vitis vinifera HOM05D000300 ORTHO05D008505 2.0e-09 67.8 47 68.1
arahy.Tifrunner.gnm1.ann1.5AH57W Arachis hypogaea HOM05D000300 ORTHO05D008505 2.6e-09 67.4 84 53.6
arahy.Tifrunner.gnm1.ann1.F96EFF Arachis hypogaea HOM05D003444 ORTHO05D008505 4.5e-09 66.6 100 45.0
arahy.Tifrunner.gnm1.ann1.MM4FDC Arachis hypogaea HOM05D000300 ORTHO05D008505 4.5e-09 66.6 35 88.6
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 1.7e-08 64.7 110 44.5
arahy.Tifrunner.gnm1.ann1.1E0HE3 Arachis hypogaea HOM05D001903 ORTHO05D013215 5.0e-08 63.2 34 91.2
arahy.Tifrunner.gnm1.ann1.VIP1CP Arachis hypogaea HOM05D000058 ORTHO05D008505 9.4e-07 58.9 37 73.0


User provided reference genes

Program Settings