Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.6e-86 322.8 166 100.0
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 1.6e-78 296.2 164 93.9
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.3e-64 250.0 158 82.3
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 4.9e-64 248.1 158 81.6
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 1.2e-62 243.4 156 80.1
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 6.8e-58 227.6 139 84.2
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 7.1e-55 217.6 165 72.7
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 7.6e-49 197.6 130 75.4
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 1.1e-47 193.7 130 75.4
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 1.1e-47 193.7 141 68.1
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 2.4e-47 192.6 133 70.7
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 7.1e-47 191.0 169 60.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.6e-46 189.9 128 71.9
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 2.7e-46 189.1 128 71.9
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 2.7e-46 189.1 140 67.9
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 6.0e-46 188.0 144 65.3
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 6.0e-46 188.0 117 77.8
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 7.8e-46 187.6 142 64.1
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 7.8e-46 187.6 123 73.2
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.3e-45 186.8 124 71.8
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.3e-45 186.8 156 62.2
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 1.3e-45 186.8 156 62.2
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 1.3e-45 186.8 137 69.3
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 3.0e-45 185.7 130 70.0
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 3.0e-45 185.7 140 66.4
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 3.0e-45 185.7 140 66.4
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 3.0e-45 185.7 144 63.9
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 3.9e-45 185.3 125 72.8
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 3.9e-45 185.3 120 74.2
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 8.7e-45 184.1 159 59.7
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 8.7e-45 184.1 119 72.3
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.1e-44 183.7 140 67.1
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.1e-44 183.7 140 67.1
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.1e-44 183.7 124 73.4
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 1.9e-44 183.0 142 64.8
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 2.5e-44 182.6 140 66.4
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 2.5e-44 182.6 125 72.0
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 2.5e-44 182.6 162 59.9
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 3.3e-44 182.2 128 71.9
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 7.3e-44 181.0 144 64.6
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 7.3e-44 181.0 122 72.1
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 7.3e-44 181.0 153 60.8
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.3e-43 180.3 178 56.7
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 1.6e-43 179.9 159 57.9
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 1.6e-43 179.9 151 62.9
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 2.1e-43 179.5 136 64.7
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 2.1e-43 179.5 154 59.7
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 3.6e-43 178.7 144 63.2
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 4.8e-43 178.3 144 63.9
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 6.2e-43 177.9 147 60.5
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 6.2e-43 177.9 125 71.2
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 6.2e-43 177.9 125 71.2
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 1.1e-42 177.2 125 68.0
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 1.1e-42 177.2 215 48.8
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 1.4e-42 176.8 121 68.6
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 2.4e-42 176.0 117 68.4
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 3.1e-42 175.6 124 68.5
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 5.3e-42 174.9 135 63.7
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.5e-41 173.3 117 67.5
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 7.6e-41 171.0 167 55.1
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 9.9e-41 170.6 122 66.4
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.7e-40 169.9 123 67.5
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.7e-40 169.9 123 67.5
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 2.2e-40 169.5 141 64.5
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 2.2e-40 169.5 141 62.4
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 2.9e-40 169.1 130 64.6
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 2.9e-40 169.1 134 65.7
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 2.9e-40 169.1 134 63.4
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 3.8e-40 168.7 147 61.2
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 6.4e-40 167.9 140 61.4
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.1e-39 167.2 150 60.0
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 1.4e-39 166.8 135 63.7
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 1.9e-39 166.4 130 63.1
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 2.4e-39 166.0 149 57.0
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 5.4e-39 164.9 158 54.4
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 5.4e-39 164.9 138 64.5
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 7.1e-39 164.5 138 60.9
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 7.1e-39 164.5 119 65.5
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 2.1e-38 162.9 120 67.5
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 2.1e-38 162.9 120 68.3
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 2.7e-38 162.5 113 69.0
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 3.5e-38 162.2 118 70.3
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 4.6e-38 161.8 109 70.6
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 4.6e-38 161.8 120 65.8
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 1.0e-37 160.6 140 59.3
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 8.7e-37 157.5 144 54.9
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 1.5e-36 156.8 131 65.6
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 6.9e-34 147.9 96 75.0
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 1.0e-32 144.1 92 75.0
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 1.9e-31 139.8 130 59.2
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 2.5e-31 139.4 130 58.5
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 3.2e-31 139.0 155 50.3
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 7.1e-31 137.9 136 50.0
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 1.6e-30 136.7 102 68.6
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 1.8e-29 133.3 102 63.7
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 3.0e-29 132.5 110 58.2
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 3.9e-29 132.1 125 56.0
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.1e-28 130.6 156 48.7
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 1.9e-28 129.8 122 55.7
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 4.3e-28 128.6 117 51.3
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 3.7e-27 125.6 115 57.4
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.8e-25 118.2 104 55.8
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.0e-24 117.5 117 55.6
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.9e-23 113.2 118 51.7
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 3.5e-22 109.0 74 73.0
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 3.0e-21 105.9 75 69.3
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 2.2e-19 99.8 76 65.8
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 5.3e-18 95.1 69 71.0
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.3e-16 90.5 53 77.4
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.9e-16 89.4 53 81.1
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 1.5e-12 77.0 48 75.0
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 2.0e-12 76.6 103 40.8
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 1.3e-11 73.9 77 48.1
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 6.9e-10 68.2 99 43.4
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 7.7e-09 64.7 60 46.7
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 1.4e-07 60.5 77 49.4
Thecc.01G162200 Theobroma cacao HOM05D006846 ORTHO05D008473 5.5e-07 58.5 80 48.8
Oeu055273.1 Olea europaea HOM05D025454 ORTHO05D024692 3.6e-06 55.8 29 86.2


User provided reference genes

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