Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.8e-117 426.0 224 100.0
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.0e-112 407.9 224 96.4
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 1.8e-82 309.7 224 75.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 5.6e-79 298.1 224 74.6
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.9e-67 259.2 224 64.7
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 7.1e-66 254.6 224 66.1
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 7.3e-63 244.6 271 52.8
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 2.2e-59 233.0 221 62.4
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 9.6e-55 217.6 226 57.1
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.1e-54 216.5 223 60.5
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.8e-54 216.1 225 59.6
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.4e-53 213.0 231 55.8
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 5.2e-53 211.8 231 55.8
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 5.2e-53 211.8 234 54.3
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 2.6e-52 209.5 200 62.0
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 2.6e-52 209.5 269 51.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.4e-52 208.8 231 55.4
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 9.9e-52 207.6 233 54.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.3e-51 207.2 226 58.8
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 8.4e-51 204.5 235 52.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.9e-50 203.4 230 54.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.9e-50 203.4 225 56.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.9e-50 203.4 232 53.0
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.4e-50 203.0 233 52.4
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.4e-50 201.8 234 52.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 9.3e-50 201.1 231 53.2
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 2.1e-49 199.9 227 57.3
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.5e-49 199.1 227 55.5
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.3e-48 197.2 184 64.1
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 6.6e-48 194.9 225 52.4
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.5e-47 193.7 231 53.7
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 3.6e-46 189.1 290 44.8
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 3.6e-46 189.1 290 44.8
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 4.8e-46 188.7 231 53.7
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.3e-45 185.3 231 51.9
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 5.3e-45 185.3 231 50.6
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 9.0e-45 184.5 231 51.5
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 9.0e-45 184.5 235 53.2
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.2e-44 184.1 231 51.5
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-44 183.7 228 50.9
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 2.0e-44 183.3 228 51.8
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 2.6e-44 183.0 227 52.4
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 7.6e-44 181.4 238 48.3
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 7.6e-44 181.4 238 48.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.1e-42 177.6 233 50.2
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 4.2e-42 175.6 325 40.6
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 4.2e-42 175.6 232 51.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 9.3e-42 174.5 146 69.9
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 9.3e-42 174.5 169 59.8
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.6e-41 173.7 146 69.2
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 4.6e-41 172.2 224 50.0
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 6.0e-41 171.8 232 49.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 6.0e-41 171.8 232 50.4
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 7.9e-41 171.4 216 51.9
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.9e-41 171.4 228 49.1
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.3e-40 170.6 223 52.0
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 2.3e-40 169.9 238 47.5
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 2.3e-40 169.9 232 49.1
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 3.0e-40 169.5 223 48.0
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.9e-40 169.1 206 52.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.9e-39 166.8 225 48.9
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 4.3e-39 165.6 229 49.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.6e-39 165.2 226 49.6
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 7.4e-39 164.9 146 66.4
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 7.4e-39 164.9 215 51.6
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 9.6e-39 164.5 234 47.0
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 4.8e-38 162.2 253 46.6
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 8.1e-38 161.4 228 47.8
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-37 161.0 212 52.8
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 1.1e-37 161.0 212 52.8
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-37 161.0 232 48.3
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.1e-37 161.0 232 48.3
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 1.1e-37 161.0 185 54.6
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-37 159.8 225 49.8
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-36 157.1 146 62.3
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.5e-36 157.1 146 62.3
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 2.0e-36 156.8 228 46.1
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 5.8e-36 155.2 224 44.2
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 5.8e-36 155.2 184 54.3
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.8e-35 152.5 228 46.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 3.5e-33 146.0 146 60.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 7.9e-33 144.8 223 47.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.8e-32 143.7 234 46.2
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 6.7e-32 141.7 209 45.9
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.7e-32 141.4 239 43.1
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.1e-31 141.0 166 51.2
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.9e-31 140.2 229 41.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 1.9e-31 140.2 233 41.6
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 3.3e-31 139.4 144 56.9
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 1.6e-30 137.1 235 44.3
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.6e-30 137.1 153 52.3
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 3.7e-30 136.0 234 42.7
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 4.8e-30 135.6 235 40.9
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.1e-29 134.4 242 39.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 1.4e-29 134.0 221 46.6
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 2.4e-29 133.3 239 43.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 3.1e-29 132.9 231 40.7
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 4.0e-29 132.5 281 40.2
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 4.0e-29 132.5 228 44.7
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-28 131.0 238 40.3
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 4.5e-28 129.0 230 42.2
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 7.6e-28 128.3 165 46.7
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.1e-26 124.4 234 41.0
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.2e-26 122.9 148 50.7
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 9.3e-26 121.3 228 40.8
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.8e-24 117.1 335 32.8
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 1.1e-23 114.4 146 49.3
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 1.1e-23 114.4 318 32.7
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.5e-23 114.0 285 33.7
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.3e-23 112.5 143 48.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 2.8e-22 109.8 228 39.5
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 7.6e-20 101.7 93 55.9
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 3.8e-19 99.4 89 59.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.1e-18 97.8 147 43.5
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.9e-18 97.1 210 42.4
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 4.6e-17 92.4 63 71.4
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.3e-16 90.1 222 34.7
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 6.7e-16 88.6 227 35.2
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 1.9e-15 87.0 207 35.7
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.3e-15 85.9 225 33.3
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 4.3e-15 85.9 229 34.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 4.3e-15 85.9 148 38.5
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 5.7e-15 85.5 69 62.3
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 5.7e-15 85.5 149 43.0
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.7e-15 84.7 226 34.1
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.2e-14 83.6 227 31.7
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.1e-13 79.7 227 34.4
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.3e-13 79.0 135 37.8
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 5.3e-13 79.0 135 37.8
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.3e-13 79.0 135 37.8
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 2.0e-12 77.0 287 30.3
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 4.5e-12 75.9 101 50.5
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.9e-12 75.5 82 58.5
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.9e-12 75.5 82 58.5
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 5.9e-12 75.5 149 38.3
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 1.0e-11 74.7 88 52.3
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 1.9e-10 70.5 79 51.9
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 5.5e-10 68.9 150 34.0
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 7.2e-10 68.6 66 54.5
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.7e-09 66.6 148 35.1
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 4.6e-09 65.9 62 56.5
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 6.1e-09 65.5 59 62.7
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.3e-08 63.5 147 32.7
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.0e-08 63.2 67 53.7
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 8.8e-08 61.6 147 32.0
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 2.6e-07 60.1 282 27.3
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 7.4e-07 58.5 101 34.7


User provided reference genes

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