Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 0.0e+00 1968.7 1220 100.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 0.0e+00 1735.7 1245 87.1
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.9e-229 800.4 1290 55.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.4e-224 783.5 1395 50.0
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.0e-214 751.5 1245 53.3
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.4e-207 726.5 1233 53.4
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 4.8e-193 679.5 1306 48.3
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.5e-186 657.9 841 48.5
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.3e-182 644.8 1314 47.3
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 8.6e-182 642.1 834 48.0
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.3e-161 575.1 1311 46.0
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.9e-161 573.2 1340 45.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.9e-158 563.5 1343 45.6
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.3e-150 537.7 715 47.0
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.9e-144 518.1 1370 44.3
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.1e-144 516.2 1330 43.1
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-140 505.4 835 42.0
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.8e-140 504.2 1364 43.3
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.8e-140 504.2 1364 43.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.6e-138 497.7 1131 39.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.7e-137 495.0 836 42.3
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.4e-136 491.1 1352 43.3
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.6e-135 488.4 1315 41.0
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 9.6e-133 479.2 1346 41.6
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 2.4e-131 474.6 1279 43.9
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.0e-131 473.8 748 42.8
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.8e-129 467.2 1337 34.1
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 6.7e-126 456.4 1330 39.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 3.1e-123 447.6 546 48.9
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 3.5e-119 434.1 830 40.4
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-115 421.8 1339 33.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-114 419.1 624 44.1
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 4.9e-113 413.7 1369 41.6
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.5e-113 413.3 1151 34.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.2e-112 411.0 1325 32.9
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.4e-109 399.8 578 43.3
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.2e-108 396.4 1140 34.1
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.4e-107 394.8 1224 42.5
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.2e-104 384.4 1254 34.4
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-98 365.5 845 34.7
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.3e-94 351.7 1258 36.6
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 2.8e-92 344.7 596 38.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.2e-90 339.3 1235 38.5
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 2.6e-90 338.2 607 38.6
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.7e-89 335.5 603 37.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-87 329.3 954 44.4
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.7e-87 328.2 604 37.6
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 4.7e-87 327.4 1172 30.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.4e-86 325.9 611 36.2
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 3.9e-86 324.3 780 34.0
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.1e-85 322.8 603 37.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 2.0e-85 322.0 605 37.4
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.7e-84 318.9 450 43.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 8.2e-84 316.6 605 37.0
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.4e-83 315.8 667 35.4
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.4e-83 315.1 543 39.0
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 7.0e-83 313.5 606 37.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.0e-83 313.5 679 35.8
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.6e-82 312.4 600 37.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.6e-82 311.6 637 38.1
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 4.5e-82 310.8 598 38.0
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 6.5e-81 307.0 679 35.6
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.9e-80 305.4 599 37.1
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 3.2e-80 304.7 605 37.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.2e-80 304.3 597 36.9
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 9.4e-80 303.1 608 37.3
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.2e-79 302.8 821 32.8
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.6e-79 301.2 600 37.2
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.8e-78 298.9 676 33.6
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.2e-78 297.4 597 36.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.8e-78 296.6 601 36.1
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-77 295.8 1120 30.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 5.7e-77 293.9 785 31.2
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 3.7e-76 291.2 804 31.2
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 6.3e-76 290.4 595 35.6
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.4e-75 289.3 800 31.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.8e-75 288.9 610 36.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 5.3e-75 287.3 743 33.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.3e-75 287.3 811 31.1
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.6e-74 285.8 1121 30.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 3.5e-74 284.6 600 35.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.0e-73 283.1 600 35.7
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.5e-73 280.0 600 35.5
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.1e-72 279.6 819 31.5
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.5e-72 278.5 800 32.1
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.2e-71 276.2 809 30.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 6.1e-71 273.9 605 36.4
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 6.1e-71 273.9 598 34.1
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.0e-70 273.1 1271 34.8
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 4.0e-70 271.2 650 35.2
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.0e-69 268.9 607 35.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 2.0e-69 268.9 805 30.6
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.4e-69 267.7 610 35.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.7e-69 267.3 610 35.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 9.8e-69 266.5 604 33.6
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.3e-68 266.2 799 31.5
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.2e-68 265.4 607 35.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.8e-68 265.0 602 35.2
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.4e-67 261.9 1085 29.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 3.1e-67 261.5 821 31.1
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 4.1e-67 261.2 610 33.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.0e-66 258.8 603 33.5
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 3.5e-66 258.1 799 30.9
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 4.5e-66 257.7 793 30.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 4.5e-66 257.7 600 34.8
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 7.7e-66 256.9 597 33.8
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-65 256.1 813 31.1
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 6.6e-65 253.8 613 32.8
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.1e-64 253.1 833 29.5
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.8e-63 248.4 749 31.6
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 2.0e-61 242.3 683 33.2
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.4e-61 241.1 456 36.6
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.4e-61 241.1 834 30.2
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.6e-58 232.6 548 35.2
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.6e-58 232.6 608 32.9
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.5e-58 231.1 757 30.6
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 5.9e-58 230.7 804 29.5
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 5.0e-57 227.6 806 29.4
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.1e-56 226.5 601 33.1
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.3e-56 224.9 986 39.2
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.6e-55 221.5 593 33.1
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.0e-54 219.9 699 30.6
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 8.9e-54 216.9 605 33.4
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 2.0e-53 215.7 486 35.6
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.0e-53 215.7 744 30.8
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 4.4e-53 214.5 764 29.6
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 4.4e-53 214.5 645 31.2
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.7e-52 212.6 607 32.8
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.9e-51 209.1 1166 30.8
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.4e-51 208.8 552 33.7
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.2e-50 206.5 493 33.3
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-50 205.7 816 27.7
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.0e-50 204.1 571 32.6
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 7.8e-50 203.8 640 29.7
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.9e-49 201.4 496 32.5
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 5.0e-49 201.1 496 32.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 5.0e-49 201.1 496 32.3
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.0e-49 201.1 496 32.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 8.6e-49 200.3 489 32.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 8.6e-49 200.3 480 34.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.3e-48 198.4 1093 35.9
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 7.3e-48 197.2 1249 32.1
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.1e-47 195.7 618 31.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.1e-46 193.4 665 29.5
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.8e-46 192.6 617 31.3
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.1e-40 173.3 637 30.6
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.9e-40 172.6 574 28.9
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 2.5e-40 172.2 460 32.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.7e-36 158.3 595 30.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.4e-35 156.4 736 26.0
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.8e-30 139.4 683 27.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.2e-30 137.9 821 27.8
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 4.4e-29 134.8 594 29.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-26 125.9 637 27.5
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 9.6e-24 117.1 585 28.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.5e-16 92.4 469 26.7
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-14 86.7 146 35.6
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.4e-14 86.7 146 35.6
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.6e-13 82.4 689 25.3
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.8e-13 81.3 331 35.3
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 5.1e-09 68.2 241 32.8
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.8e-07 61.6 199 38.2
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.8e-07 61.6 375 30.4
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 1.8e-06 59.7 84 38.1


User provided reference genes

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