Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 0.0e+00 1644.4 850 100.0
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 0.0e+00 1224.5 755 84.6
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 0.0e+00 1154.0 755 81.2
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 2.7e-283 978.8 909 59.5
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 4.7e-280 968.0 842 61.9
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 6.8e-279 964.1 841 63.0
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.1e-274 948.0 757 66.2
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 1.5e-273 946.4 720 68.9
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 8.1e-272 940.6 755 66.2
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 7.1e-268 927.5 631 79.2
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 2.7e-267 925.6 760 66.1
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 6.0e-267 924.5 758 64.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.3e-266 922.5 760 64.5
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-261 906.7 757 63.7
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.7e-261 906.4 757 63.8
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 2.2e-261 906.0 790 62.4
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 2.9e-261 905.6 755 63.7
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 9.3e-260 900.6 768 62.5
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 4.6e-259 898.3 762 63.1
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 4.6e-259 898.3 757 64.1
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 2.3e-258 896.0 844 57.9
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 8.7e-258 894.0 756 63.8
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.6e-256 889.8 751 62.7
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.8e-256 889.0 761 63.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.5e-254 883.2 752 62.6
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.3e-253 880.2 759 62.7
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.1e-252 877.1 754 61.4
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 4.6e-251 871.7 884 56.1
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 7.9e-251 870.9 756 61.5
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.1e-249 867.1 759 60.1
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 1.1e-249 867.1 844 56.2
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 1.9e-249 866.3 755 61.6
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 3.3e-249 865.5 753 61.2
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 7.4e-249 864.4 840 57.5
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 7.4e-249 864.4 773 62.0
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.8e-247 859.8 755 60.5
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 1.8e-247 859.8 754 60.5
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 5.3e-247 858.2 761 61.4
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.0e-246 856.3 789 60.1
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 2.6e-246 855.9 752 60.5
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 3.4e-246 855.5 749 60.9
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 3.4e-246 855.5 755 60.4
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 4.5e-246 855.1 771 59.5
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 5.9e-246 854.7 751 61.5
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 5.9e-246 854.7 749 60.9
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 5.9e-246 854.7 754 60.5
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 7.6e-246 854.4 752 60.6
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 2.2e-245 852.8 755 59.5
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 2.9e-245 852.4 782 59.6
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 8.4e-245 850.9 749 60.6
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 8.4e-245 850.9 789 59.4
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.5e-244 849.4 501 91.6
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 4.2e-244 848.6 755 59.5
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 6.7e-242 841.3 761 60.8
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 8.7e-242 840.9 755 60.3
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.3e-240 837.0 782 57.7
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.2e-238 830.5 750 59.7
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 1.2e-238 830.5 792 59.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.7e-237 826.6 754 56.5
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 5.0e-237 825.1 753 59.2
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.2e-236 822.4 756 57.4
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 5.5e-236 821.6 748 59.4
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 9.4e-236 820.8 775 59.1
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 3.3e-233 812.4 753 58.3
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 2.2e-232 809.7 771 56.0
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 5.9e-230 801.6 755 57.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 5.9e-230 801.6 620 72.3
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 7.7e-230 801.2 776 57.1
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 8.5e-229 797.7 756 57.0
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 5.5e-228 795.0 751 57.3
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 5.5e-228 795.0 814 55.8
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 2.3e-226 789.6 830 54.3
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.4e-225 785.4 827 52.2
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 4.4e-225 785.4 836 52.4
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.4e-223 780.4 683 60.8
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.8e-223 780.0 748 57.1
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 4.1e-223 778.9 840 51.3
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.5e-217 760.4 851 50.9
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 3.3e-217 759.2 769 54.7
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 1.4e-215 753.8 840 50.4
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.0e-214 750.0 751 55.9
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.2e-213 746.5 769 53.8
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 4.2e-212 742.3 747 54.5
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 7.2e-212 741.5 866 49.1
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 1.6e-211 740.3 754 53.7
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.2e-210 735.3 743 52.8
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 5.2e-210 735.3 757 54.0
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 6.8e-210 734.9 926 48.8
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.2e-209 734.2 746 53.4
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 1.0e-202 711.1 750 51.5
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-191 672.9 746 50.3
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.5e-188 664.1 646 57.3
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 4.7e-187 659.1 851 47.4
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 4.7e-187 659.1 851 47.4
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 1.2e-185 654.4 755 50.5
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 1.6e-182 644.0 764 48.4
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 5.0e-181 639.0 427 74.7
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.3e-176 624.4 665 52.8
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 4.9e-176 622.5 857 44.3
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 5.4e-175 619.0 717 50.9
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.5e-169 600.9 746 44.8
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 2.0e-169 600.5 789 46.6
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 4.9e-160 569.3 834 40.9
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 9.3e-159 565.1 621 51.7
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 2.2e-152 543.9 518 59.7
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 3.8e-152 543.1 599 50.1
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.8e-149 534.3 426 61.5
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.8e-149 534.3 393 67.7
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.3e-147 528.1 750 42.4
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 5.7e-132 476.1 555 51.7
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 1.1e-111 408.7 215 95.3
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 1.0e-109 402.1 560 44.6
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 1.3e-104 385.2 248 73.4
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 1.4e-90 338.6 532 42.7
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.0e-72 279.3 351 46.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 1.7e-67 261.9 134 91.8
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 8.3e-67 259.6 182 66.5
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.2e-65 255.8 240 60.0
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 3.3e-63 247.7 134 90.3
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.3e-59 235.7 179 68.7
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 1.5e-47 195.7 150 63.3
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 5.6e-47 193.7 118 77.1
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 4.6e-41 174.1 131 60.3
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 7.6e-36 156.8 99 73.7
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.9e-35 154.8 114 65.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 4.0e-29 134.4 86 70.9
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-29 133.3 154 46.1
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 2.6e-28 131.7 215 37.7
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 8.4e-27 126.7 339 30.4
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 9.3e-26 123.2 74 75.7
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 9.6e-23 113.2 536 22.9
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 3.8e-19 101.3 112 50.0
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 3.2e-18 98.2 88 52.3
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 3.2e-18 98.2 88 52.3
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 5.5e-18 97.4 94 54.3
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 2.5e-15 88.6 527 25.4
Eucgr.K01857 Eucalyptus grandis HOM05D004031 ORTHO05D011186 2.8e-14 85.1 58 70.7
GSVIVG01033459001 Vitis vinifera HOM05D004031 ORTHO05D011186 2.8e-14 85.1 60 70.0
Migut.J01860 Erythranthe guttata HOM05D004031 ORTHO05D011186 2.4e-13 82.0 60 65.0
Lj1g0020490 Lotus japonicus HOM05D004031 ORTHO05D011186 3.1e-13 81.6 49 71.4
Potri.016G060550 Populus trichocarpa HOM05D004031 ORTHO05D011186 4.1e-13 81.3 59 66.1
Cc06_g15560 Coffea canephora HOM05D004031 ORTHO05D011186 6.9e-13 80.5 60 65.0
Manes.09G038400 Manihot esculenta HOM05D004031 ORTHO05D011186 6.9e-13 80.5 59 64.4
MD12G1054200 Malus domestica HOM05D004031 ORTHO05D011186 9.0e-13 80.1 60 65.0
Prupe.7G082600 Prunus persica HOM05D004031 ORTHO05D011186 9.0e-13 80.1 60 65.0
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 1.2e-12 79.7 160 32.5
Glyma.19G150500 Glycine max HOM05D004031 ORTHO05D011186 1.2e-12 79.7 60 63.3
Thecc.05G176000 Theobroma cacao HOM05D004031 ORTHO05D011186 1.2e-12 79.7 59 66.1
CSS0013106 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D011186 3.4e-12 78.2 59 62.7
Hma1.2p1_0124F.1_g058300 Hydrangea macrophylla HOM05D004031 ORTHO05D011186 4.5e-12 77.8 59 64.4
Medtr7g093770 Medicago truncatula HOM05D004031 ORTHO05D011186 4.5e-12 77.8 48 66.7
MELO3C009606.2 Cucumis melo HOM05D004031 ORTHO05D011186 7.7e-12 77.0 49 69.4
CDE05G3199 Ceratophyllum demersum HOM05D004031 ORTHO05D011186 1.3e-11 76.3 59 62.7
Phvul.001G144800 Phaseolus vulgaris HOM05D004031 ORTHO05D011186 1.3e-11 76.3 60 58.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.7e-11 75.9 58 58.6
Sed0024429 Sechium edule HOM05D004031 ORTHO05D011186 1.7e-11 75.9 49 67.3
Gohir.D01G124600 Gossypium hirsutum HOM05D004031 ORTHO05D011186 2.2e-11 75.5 59 62.7
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.9e-11 75.1 47 74.5
Nn7g35951 Nelumbo nucifera HOM05D004031 ORTHO05D011186 3.8e-11 74.7 60 58.3
CiPaw.09G027900 Carya illinoinensis HOM05D004031 ORTHO05D011186 5.0e-11 74.3 60 60.0
Lalb_Chr15g0079141 Lupinus albus HOM05D004031 ORTHO05D011186 5.0e-11 74.3 60 61.7
Gohir.A01G137400 Gossypium hirsutum HOM05D004031 ORTHO05D011186 6.5e-11 73.9 59 61.0
Nn7g36859 Nelumbo nucifera HOM05D004031 ORTHO05D011186 1.4e-10 72.8 60 58.3
Duzib128G0401 Durio zibethinus HOM05D004031 ORTHO05D011186 1.9e-10 72.4 59 62.7
RcHm_v2.0_Chr3g0479131 Rosa chinensis HOM05D004031 ORTHO05D011186 1.9e-10 72.4 49 65.3
A03p37430 Brassica napus HOM05D004031 ORTHO05D011186 2.5e-10 72.0 58 62.1
Aa31LG3G5450 Aethionema arabicum HOM05D004031 ORTHO05D011186 1.2e-09 69.7 58 60.3
Carub.0003s1134 Capsella rubella HOM05D004031 ORTHO05D011186 1.2e-09 69.7 58 63.8
Glyma.03G147100 Glycine max HOM05D004031 ORTHO05D011186 1.2e-09 69.7 71 52.1
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 2.7e-09 68.6 70 52.9
Aa31LG3G5490 Aethionema arabicum HOM05D004031 ORTHO05D011186 3.6e-09 68.2 58 58.6
SHI31744 Sapria himalayana HOM05D004031 ORTHO05D011186 3.7e-06 58.2 35 68.6
Mapoly0005s0168 Marchantia polymorpha HOM05D004031 ORTHO05D011186 4.8e-06 57.8 45 55.6


User provided reference genes

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