Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007261g0070 Nicotiana tabacum HOM05D006123 ORTHO05D007578 1.2e-130 469.9 247 100.0
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 1.5e-101 373.2 252 81.0
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 2.2e-89 332.8 215 81.9
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 3.8e-89 332.0 219 79.9
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 3.2e-88 328.9 216 80.1
Peaxi162Scf00760g00014 Petunia axillaris HOM05D006123 ORTHO05D007578 4.2e-88 328.6 215 79.1
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 6.1e-87 324.7 219 78.1
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 1.2e-71 273.9 218 66.5
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 2.8e-71 272.7 213 66.7
MBI11_g04258_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 1.4e-70 270.4 215 64.7
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 5.8e-69 265.0 213 62.9
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 2.2e-68 263.1 215 66.5
GSVIVG01001139001 Vitis vinifera HOM05D006123 ORTHO05D007578 2.9e-68 262.7 215 64.7
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 3.7e-68 262.3 215 62.3
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 6.4e-68 261.5 215 62.8
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 6.4e-68 261.5 214 65.9
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 6.4e-68 261.5 218 62.4
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 1.1e-67 260.8 213 61.5
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 1.1e-67 260.8 241 59.3
CSS0017548 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 1.4e-67 260.4 215 64.2
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 1.4e-67 260.4 215 64.2
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 1.9e-67 260.0 215 61.9
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 2.4e-67 259.6 215 65.1
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 3.2e-67 259.2 215 62.8
Rhsim12G0090900 Rhododendron simsii HOM05D006123 ORTHO05D007578 3.2e-67 259.2 215 63.7
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 4.1e-67 258.8 218 60.1
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 7.0e-67 258.1 213 61.5
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 1.6e-66 256.9 213 61.0
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 3.5e-66 255.8 219 60.7
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 3.5e-66 255.8 213 62.0
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 6.0e-66 255.0 215 63.7
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 7.8e-66 254.6 213 62.4
Lj3C1079T4 Lonicera japonica HOM05D006123 ORTHO05D007578 1.0e-65 254.2 214 63.1
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 1.0e-65 254.2 216 61.1
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 1.7e-65 253.4 213 62.9
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 2.3e-65 253.1 216 59.7
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 3.9e-65 252.3 216 59.7
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 1.5e-64 250.4 215 61.9
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 1.9e-64 250.0 211 62.6
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 3.3e-64 249.2 215 59.1
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 7.3e-64 248.1 218 59.2
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 7.3e-64 248.1 213 62.0
AUR62018638 Chenopodium quinoa HOM05D006123 ORTHO05D007578 9.5e-64 247.7 218 58.7
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 1.2e-63 247.3 218 59.2
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 2.1e-63 246.5 216 58.8
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 2.1e-63 246.5 213 62.4
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 2.1e-63 246.5 217 58.5
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 6.2e-63 245.0 213 59.6
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 8.1e-63 244.6 216 58.8
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 1.1e-62 244.2 209 59.3
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 1.2e-61 240.7 216 58.3
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 2.0e-61 240.0 211 58.8
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 2.6e-61 239.6 212 58.0
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 3.4e-61 239.2 211 58.8
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 5.8e-61 238.4 216 58.3
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 5.8e-61 238.4 212 59.4
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 5.8e-61 238.4 212 59.4
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 1.3e-60 237.3 212 59.9
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 1.7e-60 236.9 216 56.5
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 2.2e-60 236.5 216 59.7
vmacro15977 Vaccinium macrocarpon HOM05D006123 ORTHO05D007578 2.2e-60 236.5 256 52.0
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 2.9e-60 236.1 213 59.6
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 3.7e-60 235.7 211 57.8
DCAR_023486 Daucus carota HOM05D006123 ORTHO05D007578 3.7e-60 235.7 212 58.0
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 4.9e-60 235.3 215 56.3
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 6.4e-60 235.0 212 58.5
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 6.4e-60 235.0 212 59.0
Ca_16273_v3 Cicer arietinum L. HOM05D006123 ORTHO05D007578 8.3e-60 234.6 213 58.7
Thhalv10010449m.g Eutrema salsugineum HOM05D006123 ORTHO05D007578 8.3e-60 234.6 211 57.3
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 8.3e-60 234.6 213 57.7
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 1.9e-59 233.4 211 57.3
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 2.4e-59 233.0 216 57.9
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 3.2e-59 232.6 211 58.3
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 3.2e-59 232.6 211 57.3
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 4.1e-59 232.3 210 57.6
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 9.2e-59 231.1 213 60.1
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 9.2e-59 231.1 211 57.8
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 1.6e-58 230.3 212 56.1
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 2.7e-58 229.6 213 59.6
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 2.7e-58 229.6 213 59.6
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 2.7e-58 229.6 212 56.1
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 6.0e-58 228.4 217 56.2
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 3.0e-57 226.1 213 57.3
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 3.0e-57 226.1 215 55.8
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 3.9e-57 225.7 216 56.9
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 3.9e-57 225.7 218 55.0
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 1.1e-56 224.2 213 55.4
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 3.3e-56 222.6 215 56.7
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 1.6e-55 220.3 218 54.1
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 1.4e-54 217.2 214 54.2
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 7.6e-53 211.5 177 63.8
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 3.2e-51 206.1 215 53.0
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 5.4e-51 205.3 189 59.3
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 2.7e-50 203.0 216 52.3
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.0e-49 201.1 214 50.9
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 1.7e-49 200.3 213 49.8
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 9.6e-48 194.5 214 50.9
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 1.2e-47 194.1 217 48.8
Glyma.20G054400 Glycine max HOM05D006123 ORTHO05D007578 1.7e-44 183.7 172 58.7
SGA_v2.0_scaffold258G45757 Striga asiatica HOM05D006123 ORTHO05D007578 1.6e-42 177.2 146 61.6
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 3.5e-42 176.0 144 61.8
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 1.5e-40 170.6 144 58.3
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 2.8e-39 166.4 226 46.0
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 8.1e-39 164.9 210 48.6
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 4.0e-38 162.5 216 45.8
Lsat_1_v5_gn_6_11200 Lactuca sativa HOM05D001489 ORTHO05D007578 4.2e-27 125.9 149 47.7
CBR_g16829 Chara braunii HOM05D006123 ORTHO05D007578 1.2e-26 124.4 214 36.0
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 3.5e-26 122.9 84 72.6
AagrBONN_evm.TU.Sc2ySwM_344.168 Anthoceros agrestis HOM05D006123 ORTHO05D007578 1.3e-23 114.4 201 37.8
Lj2g0003712 Lotus japonicus HOM05D006123 ORTHO05D007578 1.6e-23 114.0 109 55.0
Zm00001eb097710 Zea mays HOM05D006123 ORTHO05D007578 2.9e-20 103.2 110 50.9
SHI10577 Sapria himalayana HOM05D006123 ORTHO05D007578 1.4e-19 100.9 133 40.6
SHI51501 Sapria himalayana HOM05D006123 ORTHO05D007578 1.4e-19 100.9 133 40.6
Sopen11g017280 Solanum pennellii HOM05D006123 ORTHO05D000001 2.5e-16 90.1 73 71.2
CDE04G2001 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 3.7e-15 86.3 78 60.3
Pp3c5_26180 Physcomitrium patens HOM05D003692 ORTHO05D004295 5.7e-08 62.4 148 32.4
BolC4t24736H Brassica oleracea HOM05D006123 ORTHO05D007578 2.2e-07 60.5 68 47.1
BcaC09g49821 Brassica carinata HOM05D006123 ORTHO05D007578 6.3e-07 58.9 67 46.3
BcaC09g49825 Brassica carinata HOM05D006123 ORTHO05D007578 6.3e-07 58.9 67 46.3
C01p32570 Brassica napus HOM05D006123 ORTHO05D007578 6.3e-07 58.9 67 46.3
AUR62039304 Chenopodium quinoa HOM05D006123 ORTHO05D007578 8.2e-07 58.5 57 52.6
Cre07.g323500 Chlamydomonas reinhardtii HOM05D006123 ORTHO05D007578 1.4e-06 57.8 106 32.1
MSTRG.19074 Avicennia marina HOM05D003692 ORTHO05D004295 1.8e-06 57.4 191 31.9
HanXRQChr01g0003311 Helianthus annuus HOM05D003692 ORTHO05D004295 2.4e-06 57.0 209 29.7
Migut.J00308 Erythranthe guttata HOM05D003692 ORTHO05D004295 3.1e-06 56.6 208 28.8
FAN02G3395 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.1e-06 56.6 147 32.7
FAN09G2852 Fragaria x ananassa HOM05D003692 ORTHO05D004295 3.1e-06 56.6 177 29.4
PSO339G0014 Papaver somniferum HOM05D003692 ORTHO05D004295 4.1e-06 56.2 140 30.7
FvH4_6g11350 Fragaria vesca HOM05D003692 ORTHO05D004295 5.3e-06 55.8 177 28.8
CBR_g66724 Chara braunii HOM05D003692 ORTHO05D004295 6.9e-06 55.5 181 27.6
Hma1.2p1_0877F.1_g231720 Hydrangea macrophylla HOM05D003692 ORTHO05D004295 6.9e-06 55.5 192 28.6
Lsat_1_v5_gn_5_154881 Lactuca sativa HOM05D003692 ORTHO05D004295 6.9e-06 55.5 182 29.7
Sed0012536 Sechium edule HOM05D003692 ORTHO05D004295 6.9e-06 55.5 147 32.7
FAN05G1146 Fragaria x ananassa HOM05D003692 ORTHO05D004295 9.0e-06 55.1 190 28.4


User provided reference genes

Program Settings