Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2715.3 1340 100.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2571.2 1344 94.9
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 2298.1 1347 84.2
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 2291.9 1347 84.0
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 2269.2 1349 84.4
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 2223.4 1338 83.4
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1534.2 1359 57.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1400.2 1370 52.8
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 1380.5 1362 53.5
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 0.0e+00 1359.4 1360 51.5
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 0.0e+00 1298.1 1362 49.3
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 0.0e+00 1295.0 1342 50.7
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1293.5 1369 50.0
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1291.9 1299 52.0
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 0.0e+00 1281.9 1441 48.6
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 0.0e+00 1280.4 1335 50.3
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1270.8 1373 48.5
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1267.7 1373 48.4
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 0.0e+00 1266.1 1367 48.7
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 0.0e+00 1264.6 1373 48.4
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 0.0e+00 1258.8 1361 49.0
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1258.8 1371 48.7
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1258.0 1371 48.6
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 0.0e+00 1255.7 1376 48.2
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1253.8 1361 49.4
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 0.0e+00 1246.9 1357 49.4
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 0.0e+00 1246.1 1355 49.0
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 0.0e+00 1239.9 1365 48.5
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 0.0e+00 1238.4 1364 48.3
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 0.0e+00 1230.3 1338 49.5
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 0.0e+00 1229.9 1354 48.9
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 0.0e+00 1228.0 1454 45.7
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 0.0e+00 1226.5 1381 47.6
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 0.0e+00 1221.5 1367 48.4
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1213.7 1381 47.5
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 0.0e+00 1213.7 1381 47.4
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 0.0e+00 1208.7 1222 51.8
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 0.0e+00 1203.7 1378 48.5
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 0.0e+00 1200.7 1372 48.3
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 0.0e+00 1181.0 1385 46.6
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 0.0e+00 1178.7 1375 47.3
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 0.0e+00 1169.5 1374 46.8
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 0.0e+00 1159.8 1362 46.8
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 0.0e+00 1157.1 1325 46.9
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 0.0e+00 1152.9 1353 47.2
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 0.0e+00 1151.0 1352 47.0
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 0.0e+00 1149.4 1386 46.2
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 0.0e+00 1148.7 1353 46.0
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1140.6 1385 45.9
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 0.0e+00 1135.2 1354 45.6
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1134.8 1376 45.9
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 0.0e+00 1133.6 1215 48.6
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1130.9 1355 45.8
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 0.0e+00 1129.8 1366 45.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 0.0e+00 1127.9 1355 45.8
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 0.0e+00 1124.8 1367 45.4
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1114.0 1230 48.1
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 0.0e+00 1111.3 1332 46.5
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 0.0e+00 1101.7 1348 44.9
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 0.0e+00 1084.7 1377 44.7
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 0.0e+00 1083.9 1391 44.1
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 0.0e+00 1078.2 1357 44.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 4.6e-311 1071.6 1372 44.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 8.2e-311 1070.8 1367 44.8
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 2.6e-304 1049.3 1368 43.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 5.7e-304 1048.1 1351 44.3
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 1.3e-303 1047.0 1374 43.7
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 2.2e-303 1046.2 1354 44.2
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 6.9e-302 1041.2 1386 43.5
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 1.2e-301 1040.4 1378 43.8
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 2.6e-301 1039.3 1372 42.9
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 2.9e-300 1035.8 1378 43.8
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 9.4e-299 1030.8 1352 43.1
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 2.1e-298 1029.6 1365 43.7
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 1.8e-297 1026.5 1367 43.5
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 1.7e-295 1020.0 1367 43.5
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 2.2e-295 1019.6 1376 43.2
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 8.2e-295 1017.7 1366 43.3
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 4.5e-293 1011.9 1375 43.8
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 2.8e-287 992.6 1346 42.5
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 4.2e-283 978.8 1341 42.5
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 1.2e-282 977.2 1225 44.9
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 9.8e-280 967.6 1185 45.3
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 1.2e-264 917.5 1211 43.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 9.0e-233 811.6 1348 36.9
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.1e-225 786.6 1390 38.0
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 6.5e-207 725.7 1392 34.1
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 5.5e-206 722.6 1039 40.8
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.8e-196 691.0 1191 37.1
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 2.1e-181 641.0 737 48.6
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 8.5e-175 619.0 777 44.7
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.9e-167 594.0 679 46.4
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.6e-157 561.6 719 45.5
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.5e-147 528.5 1452 29.4
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.5e-134 485.3 1481 29.5
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.9e-119 434.1 448 49.1
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 2.5e-118 431.4 760 35.9
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 4.4e-115 420.6 355 61.7
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.6e-107 394.8 943 31.1
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 2.3e-95 355.1 326 58.3
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 4.1e-92 344.4 355 54.4
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 5.5e-89 334.0 334 55.7
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.5e-86 325.9 330 55.2
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.4e-86 323.6 333 55.0
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 3.5e-67 261.5 153 81.7
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.1e-65 256.5 399 44.1
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 1.6e-56 226.1 203 51.7
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 3.0e-55 221.9 151 71.5
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 6.8e-55 220.7 203 52.2
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 2.5e-49 202.2 155 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 4.7e-48 198.0 228 42.5
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 4.2e-41 174.9 153 56.9
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.9e-35 154.5 95 81.1
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.5e-33 149.1 147 58.5
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 4.3e-33 148.3 257 35.4
Psat1g001920 Pisum sativum HOM05D004435 ORTHO05D005103 9.8e-30 137.1 223 37.2
Cpa.g.c42981 Carica papaya HOM05D004435 ORTHO05D005103 2.9e-29 135.6 211 33.6
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 4.1e-28 131.7 90 76.7
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 9.2e-28 130.6 276 33.7
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 9.5e-25 120.6 116 50.0
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.6e-24 119.8 150 44.0
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.8e-24 119.0 109 57.8
FAN10G3182 Fragaria x ananassa HOM05D004435 ORTHO05D005103 2.3e-23 115.9 116 49.1
Psat5g173880 Pisum sativum HOM05D004435 ORTHO05D005103 1.5e-22 113.2 181 38.1
Psat5g173920 Pisum sativum HOM05D004435 ORTHO05D005103 1.5e-22 113.2 181 38.1
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 8.3e-21 107.5 285 29.8
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 6.0e-19 101.3 302 27.2
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 3.4e-14 85.5 120 39.2
BcaNung07057 Brassica carinata HOM05D004435 ORTHO05D005103 9.2e-12 77.4 160 38.1
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.1e-10 71.6 126 34.9


User provided reference genes

Program Settings