Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 2253.0 1102 100.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 0.0e+00 1969.5 1067 90.5
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 0.0e+00 1831.6 1094 82.8
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 0.0e+00 1784.6 1095 81.0
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 0.0e+00 1779.6 1091 81.1
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 0.0e+00 1778.1 1095 80.9
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 0.0e+00 1144.0 1089 55.5
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1129.0 1086 53.8
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 0.0e+00 1124.4 1088 54.0
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 0.0e+00 1095.5 1087 54.9
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 7.5e-312 1074.7 1093 52.4
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.0e-295 1020.4 1106 49.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.0e-295 1020.4 1106 49.0
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 3.0e-295 1018.8 1099 51.5
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 1.2e-294 1016.9 1080 51.2
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 1.6e-291 1006.5 1081 50.7
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 2.7e-291 1005.7 1082 49.9
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 2.9e-290 1002.3 1091 50.7
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 4.0e-287 991.9 1099 49.2
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 5.2e-287 991.5 1087 49.6
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 1.2e-286 990.3 1098 50.8
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 1.5e-286 989.9 1102 50.6
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 4.4e-286 988.4 1100 50.5
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 4.4e-286 988.4 1090 49.5
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 4.4e-286 988.4 1098 48.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 7.0e-284 981.1 1125 49.3
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.9e-283 978.0 1100 50.1
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 1.3e-282 976.9 1093 48.3
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 1.7e-282 976.5 1098 48.5
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 2.9e-282 975.7 1088 50.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 3.9e-282 975.3 1097 50.0
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 8.6e-282 974.2 1102 48.9
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-280 969.9 1098 49.8
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 3.6e-280 968.8 1098 49.7
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.0e-279 967.2 1123 49.7
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 1.0e-279 967.2 1094 48.7
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 2.3e-279 966.1 1094 48.7
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.2e-279 964.9 1097 49.8
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 9.8e-278 960.7 1094 48.3
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 1.3e-277 960.3 1100 48.4
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 1.5e-273 946.8 1114 47.8
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.7e-269 933.3 1069 47.1
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 7.3e-265 917.9 1100 46.4
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 1.2e-262 910.6 1099 46.6
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 6.6e-258 894.8 1094 47.3
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 1.1e-257 894.0 1086 46.2
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 7.3e-257 891.3 1099 46.0
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 2.8e-256 889.4 1097 46.9
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 8.1e-256 887.9 1100 46.1
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 6.8e-255 884.8 1099 47.0
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 6.8e-255 884.8 1089 47.1
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 3.8e-253 879.0 1090 46.7
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 4.2e-252 875.5 1128 46.5
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 6.0e-251 871.7 1091 45.7
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 8.7e-250 867.8 1098 45.4
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 1.9e-249 866.7 1114 45.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 2.5e-249 866.3 1097 46.1
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 1.6e-248 863.6 1094 45.2
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 1.1e-247 860.9 1099 44.9
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.4e-247 860.5 1098 44.9
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 3.1e-247 859.4 1093 45.5
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 2.0e-246 856.7 1097 44.5
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 7.6e-246 854.7 1096 44.7
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 1.7e-245 853.6 1089 45.2
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 1.1e-244 850.9 1145 44.1
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 2.4e-244 849.7 1113 43.6
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 4.8e-240 835.5 1100 43.8
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 1.4e-236 823.9 1107 43.5
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 4.2e-236 822.4 1113 43.8
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 1.9e-233 813.5 1095 43.3
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 3.3e-233 812.8 1086 43.9
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.4e-233 811.6 1084 43.5
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 7.4e-233 811.6 1080 44.5
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 2.8e-232 809.7 1081 44.3
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 4.8e-232 808.9 1079 44.1
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 2.4e-231 806.6 1100 43.7
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 3.4e-230 802.7 1099 43.3
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 1.9e-228 797.0 1102 43.1
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 9.3e-228 794.7 1079 43.7
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 2.1e-227 793.5 1079 43.7
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 1.0e-226 791.2 1096 42.4
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 5.1e-226 788.9 1082 43.4
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 6.7e-226 788.5 1079 43.5
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 7.4e-225 785.0 1102 41.9
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 4.1e-223 779.2 1098 42.6
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 4.6e-219 765.8 1081 42.4
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 7.9e-219 765.0 1075 42.1
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.7e-203 713.4 516 66.5
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 7.0e-199 698.7 1123 39.2
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.0e-197 694.9 603 57.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 1.9e-196 690.6 1083 40.3
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 9.1e-191 671.8 1094 37.8
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 1.3e-181 641.3 596 53.0
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.3e-178 630.6 577 57.4
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 5.2e-178 629.4 1084 36.3
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 5.6e-164 582.8 1081 35.5
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 3.7e-144 516.9 475 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.2e-136 491.1 503 48.9
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 4.9e-120 436.8 493 45.6
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 5.1e-101 373.6 227 76.7
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 5.0e-96 357.1 182 93.4
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.2e-85 320.5 197 78.2
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 9.1e-74 283.1 377 42.2
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.7e-70 270.8 816 28.3
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 7.5e-68 263.5 538 33.8
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 2.2e-67 261.9 294 49.0
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 2.7e-49 201.8 228 52.6
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.6e-46 192.6 439 33.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 9.8e-44 183.3 144 63.2
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.0e-40 171.0 145 61.4
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 1.4e-34 152.9 114 65.8
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 1.1e-26 126.7 75 77.3
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 1.4e-26 126.3 394 27.2
Atru.chr5.692 Acer truncatum HOM05D004435 ORTHO05D005103 9.2e-26 123.6 102 60.8
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 1.4e-21 109.8 612 24.2
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 2.4e-21 109.0 120 52.5
MD07G1152500 Malus domestica HOM05D004435 ORTHO05D005103 1.4e-13 83.2 48 77.1
arahy.Tifrunner.gnm1.ann1.63Q0V0 Arachis hypogaea HOM05D008137 ORTHO05D005103 1.3e-11 76.6 108 43.5
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 1.9e-10 72.8 295 27.1
Peaxi162Scf00878g00011 Petunia axillaris HOM05D035639 ORTHO05D005103 3.2e-10 72.0 61 67.2
Psat4g016800 Pisum sativum HOM05D004435 ORTHO05D005103 7.9e-09 67.4 194 27.8
Atru.chr5.687 Acer truncatum HOM05D002476 ORTHO05D002652 1.9e-07 62.8 67 55.2
TPR.G40720 Trifolium pratense HOM05D004435 ORTHO05D005103 2.5e-07 62.4 107 33.6
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 8.1e-06 57.4 73 42.5


User provided reference genes

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