Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 4.5e-217 757.7 393 100.0
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.0e-196 689.1 410 88.8
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.4e-196 688.3 397 91.2
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 1.1e-191 673.3 410 87.6
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 1.5e-191 672.9 410 87.3
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.1e-190 669.1 405 87.7
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 2.7e-177 625.5 333 96.1
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 4.7e-174 614.8 411 79.3
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.8e-172 607.8 413 77.5
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 4.1e-170 601.7 414 79.0
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 1.6e-169 599.7 412 78.2
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 1.7e-168 596.3 412 77.7
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 3.0e-168 595.5 413 77.0
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 3.0e-168 595.5 406 77.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 8.6e-168 594.0 412 77.7
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 1.9e-167 592.8 411 77.6
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 9.5e-167 590.5 412 76.9
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 9.5e-167 590.5 412 77.2
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.8e-165 586.3 412 76.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 3.1e-165 585.5 413 76.0
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 5.2e-165 584.7 416 76.0
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 9.8e-164 580.5 412 74.8
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 9.8e-164 580.5 409 75.8
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 9.8e-164 580.5 413 75.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.7e-163 579.7 411 76.4
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 1.7e-163 579.7 412 75.7
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.7e-163 578.6 415 74.9
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.4e-162 576.6 412 75.2
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-162 576.6 410 75.6
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-162 576.2 410 75.1
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.4e-162 575.9 413 74.6
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 9.2e-162 573.9 424 73.1
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 3.5e-161 572.0 410 74.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.6e-161 571.6 408 74.3
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 6.0e-161 571.2 411 74.5
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.7e-160 569.7 413 74.1
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.0e-160 568.9 415 74.5
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.9e-160 568.5 411 74.0
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 6.6e-160 567.8 410 74.1
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.6e-160 567.4 411 74.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.9e-159 566.2 414 74.4
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 2.5e-159 565.8 413 73.8
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 5.6e-159 564.7 411 72.7
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.1e-158 562.8 418 72.7
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.1e-158 562.8 408 73.8
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.1e-158 562.8 419 72.6
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 4.7e-158 561.6 411 71.3
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.1e-157 560.5 412 73.8
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.3e-157 559.3 420 72.1
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.0e-157 558.5 408 72.8
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 6.8e-157 557.8 415 73.3
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 6.8e-157 557.8 412 73.3
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.5e-156 556.6 416 72.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 4.4e-156 555.1 412 72.8
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 5.8e-156 554.7 413 72.9
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 5.8e-156 554.7 416 72.4
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.6e-156 554.3 410 73.7
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.3e-155 553.5 410 70.2
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.2e-155 552.7 408 72.8
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 4.9e-155 551.6 412 73.5
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 6.4e-155 551.2 449 69.0
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 6.4e-155 551.2 413 71.7
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.9e-154 549.7 430 70.0
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.4e-154 548.1 415 70.4
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 5.4e-154 548.1 411 70.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.6e-153 546.6 430 69.3
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.7e-153 545.8 413 72.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.7e-153 545.8 414 71.0
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 3.5e-153 545.4 411 71.3
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.6e-153 545.0 412 71.1
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 7.8e-153 544.3 409 72.6
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.0e-152 543.9 412 70.9
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.3e-152 543.5 411 70.8
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.3e-152 543.5 411 71.3
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.7e-152 543.1 416 70.0
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 3.0e-152 542.3 415 70.1
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.6e-152 540.8 409 70.2
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.5e-151 540.0 425 69.6
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 2.5e-151 539.3 412 70.6
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-150 537.0 412 69.9
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.1e-150 536.2 414 70.0
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 2.8e-150 535.8 414 70.0
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.7e-150 535.0 409 69.9
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-149 533.5 419 68.7
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 5.2e-149 531.6 423 69.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 6.9e-149 531.2 412 69.2
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 6.9e-149 531.2 412 70.1
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 6.9e-149 531.2 412 68.4
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.6e-148 529.3 423 68.8
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 4.4e-148 528.5 421 68.4
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 8.4e-147 524.2 360 78.1
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.4e-146 523.5 424 66.3
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.4e-146 523.5 443 65.9
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-145 520.4 413 68.3
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.2e-145 520.4 443 65.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 2.1e-145 519.6 415 68.2
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 6.0e-145 518.1 416 67.8
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.3e-143 512.3 418 67.2
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.6e-142 510.0 338 79.9
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 1.4e-138 496.9 390 67.4
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 4.6e-137 491.9 413 67.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-136 488.8 478 60.7
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.9e-136 488.8 478 60.7
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.3e-135 485.7 415 64.1
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.6e-134 482.3 355 72.4
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.6e-134 482.3 355 72.4
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 6.2e-134 481.5 348 72.1
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.3e-127 459.1 353 69.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.9e-125 451.4 316 74.7
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.7e-123 446.8 417 61.4
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.4e-122 443.7 417 58.0
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 3.3e-119 432.6 412 60.4
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 4.3e-119 432.2 383 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 7.2e-114 414.8 425 54.1
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 8.2e-110 401.4 426 56.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 9.7e-103 377.9 370 55.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.9e-96 355.9 273 70.3
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 8.2e-94 348.2 300 63.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.1e-93 346.3 324 62.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.6e-92 344.0 337 60.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 7.2e-74 282.0 417 41.7
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 4.0e-72 276.2 316 49.4
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 5.4e-69 265.8 424 40.6
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.8e-61 240.7 262 54.6
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.7e-59 234.2 126 87.3
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.6e-59 231.9 463 36.1
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-58 230.7 305 45.9
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 4.7e-57 226.1 474 34.0
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.0e-53 212.2 299 43.5
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 5.0e-51 206.1 315 40.0
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.9e-45 187.6 115 80.9
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.1e-45 185.7 115 80.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.5e-44 183.3 353 35.4
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 8.1e-41 172.2 112 77.7
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-40 171.8 136 67.6
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.8e-40 171.0 131 65.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.0e-32 143.3 137 60.6
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.1e-25 120.9 129 54.3
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 4.8e-25 119.8 76 80.3
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.5e-23 113.2 99 56.6
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 5.8e-23 112.8 67 83.6
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.9e-19 100.1 109 53.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 8.7e-19 99.0 129 47.3
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-18 98.2 73 68.5
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 4.0e-16 90.1 96 54.2
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.2e-15 88.6 65 67.7
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 1.4e-13 81.6 59 74.6
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.1e-12 77.8 96 44.8
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 2.7e-12 77.4 54 68.5
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 6.7e-11 72.8 47 74.5
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 3.3e-10 70.5 69 62.3
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-09 68.2 36 88.9
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-09 68.2 36 88.9
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 1.6e-09 68.2 36 88.9
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 3.7e-09 67.0 50 62.0
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 2.4e-08 64.3 42 76.2
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 3.1e-08 63.9 36 88.9
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 1.2e-07 62.0 91 48.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 1.5e-07 61.6 97 42.3
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 3.4e-07 60.5 52 63.5
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-07 60.1 119 28.6
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-07 60.1 119 28.6
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 4.5e-07 60.1 130 30.8
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 5.8e-07 59.7 37 75.7
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 5.8e-07 59.7 119 28.6
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 5.8e-07 59.7 119 28.6
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 7.6e-07 59.3 119 28.6
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 1.0e-06 58.9 56 57.1
MD05G1213200 Malus domestica HOM05D004608 ORTHO05D006533 2.9e-06 57.4 64 56.2
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 2.9e-06 57.4 119 27.7
MD05G1213500 Malus domestica HOM05D004608 ORTHO05D246297 4.9e-06 56.6 61 57.4


User provided reference genes

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