Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 0.0e+00 1107.8 551 100.0
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 6.0e-284 980.3 521 95.6
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 3.0e-243 845.1 526 84.6
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.0e-235 820.1 525 81.1
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 4.2e-229 798.1 521 77.7
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.0e-226 789.3 527 78.6
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 2.6e-226 788.9 527 78.4
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 7.0e-184 647.9 525 62.9
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 1.0e-182 644.0 541 61.7
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 1.1e-176 624.0 563 59.1
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 2.4e-176 622.9 531 61.4
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.1e-173 614.0 555 58.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 1.1e-173 614.0 555 58.0
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.5e-173 613.6 561 58.3
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 4.3e-173 612.1 527 60.3
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.9e-169 599.4 531 59.9
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 8.4e-169 597.8 515 60.0
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 1.4e-168 597.0 530 58.3
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-168 597.0 560 57.5
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 6.6e-166 588.2 540 56.9
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 1.2e-164 583.9 529 57.3
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 1.1e-163 580.9 557 57.1
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.4e-162 575.5 516 57.6
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.4e-162 575.5 516 57.6
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.9e-162 574.3 524 56.9
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 4.9e-161 572.0 519 57.2
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 1.9e-160 570.1 534 55.8
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 1.9e-160 570.1 525 57.5
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 6.0e-159 565.1 541 54.5
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.0e-158 564.3 515 56.5
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 1.5e-157 560.5 564 53.7
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 2.5e-157 559.7 535 55.7
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 9.6e-157 557.8 540 53.9
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 1.3e-156 557.4 548 54.0
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 9.0e-155 551.2 516 56.4
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.2e-154 550.8 528 54.7
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 2.0e-154 550.1 538 54.1
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 4.5e-154 548.9 527 54.6
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 7.6e-154 548.1 539 54.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.9e-153 546.2 531 53.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.4e-153 545.0 538 52.6
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 1.1e-152 544.3 529 54.4
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 3.2e-152 542.7 530 54.3
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 5.4e-152 542.0 525 54.7
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 5.4e-152 542.0 524 53.4
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 9.3e-152 541.2 548 53.3
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 3.5e-151 539.3 528 54.2
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 3.0e-150 536.2 520 53.1
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 4.0e-147 525.8 537 52.9
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 6.9e-147 525.0 531 52.5
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 3.4e-146 522.7 522 53.3
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-145 520.8 520 51.5
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 1.9e-144 516.9 539 51.2
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.2e-144 515.8 524 53.1
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 9.3e-144 514.6 518 53.3
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 1.6e-143 513.8 556 50.9
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 3.5e-143 512.7 547 51.7
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.5e-143 512.7 537 52.1
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 3.0e-142 509.6 558 50.4
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 5.6e-141 505.4 537 52.0
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 1.8e-139 500.4 528 52.3
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 6.9e-139 498.4 525 53.3
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 6.9e-139 498.4 525 52.6
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 9.0e-139 498.0 478 56.3
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 1.2e-138 497.7 524 49.6
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.6e-138 496.5 545 50.1
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 5.8e-138 495.4 560 48.9
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 1.7e-137 493.8 527 48.8
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.9e-137 493.0 524 50.0
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 3.8e-137 492.7 550 47.6
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.9e-136 490.3 524 49.6
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.5e-136 490.0 525 50.1
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 1.0e-134 484.6 530 49.1
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 1.3e-134 484.2 542 50.0
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 2.3e-134 483.4 526 49.0
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 3.0e-134 483.0 525 48.4
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.9e-134 482.6 528 49.1
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 1.1e-133 481.1 486 52.3
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 2.5e-133 479.9 528 48.3
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 3.3e-133 479.6 528 49.1
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 3.7e-132 476.1 528 48.9
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 3.1e-131 473.0 523 48.8
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 4.1e-131 472.6 529 47.6
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 6.9e-131 471.9 522 49.8
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 1.5e-130 470.7 522 48.7
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 5.9e-130 468.8 522 49.6
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 1.3e-129 467.6 523 48.6
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 6.5e-129 465.3 523 48.0
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 1.4e-128 464.2 555 45.9
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 4.2e-128 462.6 523 48.2
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 1.2e-127 461.1 521 47.8
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 2.1e-127 460.3 527 47.6
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 4.6e-127 459.1 530 46.6
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 3.0e-126 456.4 526 48.1
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.9e-125 453.8 541 46.8
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 1.9e-120 437.2 516 48.4
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 7.2e-120 435.3 534 46.4
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 1.0e-118 431.4 480 50.0
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 3.9e-118 429.5 525 45.0
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 3.3e-117 426.4 512 44.5
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 2.6e-114 416.8 531 43.9
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 1.4e-112 411.0 509 44.4
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.9e-112 410.6 507 44.4
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 7.2e-112 408.7 552 41.5
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 1.4e-110 404.4 527 41.7
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 5.2e-110 402.5 538 42.6
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 5.2e-110 402.5 534 42.1
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 9.1e-107 391.7 535 40.9
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 1.7e-105 387.5 565 41.4
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 4.2e-104 382.9 559 38.8
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 5.2e-102 375.9 401 51.1
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 1.2e-101 374.8 514 40.5
Hma1.2p1_1201F.1_g266610 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-97 360.5 507 41.4
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.9e-96 357.5 514 41.2
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 3.6e-95 353.2 537 38.7
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 4.7e-95 352.8 535 38.5
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 8.3e-92 342.0 525 39.2
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 1.1e-91 341.7 561 39.0
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 4.5e-90 336.3 487 40.7
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.8e-83 314.3 516 38.2
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.7e-82 310.5 516 38.4
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-77 293.9 477 37.7
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.3e-76 291.6 522 36.8
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-76 290.4 477 37.3
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 2.5e-72 277.3 508 34.6
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 2.7e-58 230.7 532 29.7
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-55 221.1 470 33.6
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.1e-55 221.1 470 33.6
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 8.9e-54 215.7 405 34.3
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 2.2e-52 211.1 282 44.0
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 2.4e-46 191.0 320 39.1
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.4e-43 181.8 173 54.3
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 9.3e-43 179.1 520 28.1
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 6.0e-42 176.4 142 57.0
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 1.0e-41 175.6 461 28.4
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 3.0e-41 174.1 492 27.8
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 5.6e-40 169.9 501 27.3
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 6.2e-39 166.4 151 55.6
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 4.5e-37 160.2 392 29.3
Peaxi162Scf00132g00037 Petunia axillaris HOM05D004790 ORTHO05D005678 1.3e-33 148.7 440 26.6
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 1.9e-32 144.8 462 26.4
TPR.G11082 Trifolium pratense HOM05D004790 ORTHO05D005678 2.6e-21 107.8 497 25.2
Hma1.2p1_0002F.1_g002210 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.9e-20 104.4 301 30.6
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.9e-20 104.4 387 25.6
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 6.7e-17 93.2 55 76.4
GSVIVG01029526001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.4e-14 85.5 63 61.9
Dinv07566 Davidia involucrata HOM05D004790 ORTHO05D005678 4.1e-14 84.0 514 21.2
Sabra13G0113000 Salix brachista HOM05D004790 ORTHO05D005678 1.5e-13 82.0 78 48.7
FAN05G5117 Fragaria x ananassa HOM05D000001 ORTHO05D000424 3.8e-12 77.4 56 62.5
Sabra13G0109000 Salix brachista HOM05D000001 ORTHO05D000424 6.5e-12 76.6 54 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.9e-11 75.1 127 29.9
Hma1.2p1_0002F.1_g002220 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.6e-10 70.5 56 57.1
Dinv17315 Davidia involucrata HOM05D004790 ORTHO05D005678 6.7e-09 66.6 89 37.1
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 5.7e-08 63.5 45 55.6
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 5.7e-08 63.5 181 27.1
Dinv07569 Davidia involucrata HOM05D032653 ORTHO05D005678 4.1e-06 57.4 134 29.1


User provided reference genes

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