Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.1e-232 809.7 416 100.0
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.4e-221 771.9 416 96.2
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 5.7e-202 707.6 416 87.3
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 3.5e-196 688.3 416 87.5
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 4.6e-196 688.0 416 87.5
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.6e-193 679.5 416 86.5
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.2e-180 636.7 351 92.9
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 8.5e-158 560.8 417 70.5
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.4e-152 543.5 422 69.4
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.2e-151 540.4 400 70.2
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.9e-149 533.1 419 67.8
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.4e-147 526.9 417 67.1
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.8e-147 526.6 405 66.9
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.8e-147 526.6 394 69.0
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-147 526.2 396 68.4
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.2e-147 525.0 396 68.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.0e-146 523.1 420 66.4
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 2.2e-145 519.6 412 65.8
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 3.7e-145 518.8 426 64.6
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.9e-145 518.5 367 73.3
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 4.6e-143 511.9 398 66.3
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 5.9e-143 511.5 399 66.9
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-142 510.4 425 64.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 6.6e-142 508.1 429 63.6
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 5.6e-141 505.0 396 65.7
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 7.3e-141 504.6 455 60.2
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 9.5e-141 504.2 411 65.5
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 2.1e-140 503.1 399 65.4
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 6.2e-140 501.5 410 65.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.0e-139 500.7 396 67.2
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.1e-139 499.2 396 65.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 4.0e-139 498.8 418 63.2
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 6.8e-139 498.0 399 64.9
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 8.9e-139 497.7 397 64.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.7e-137 493.4 399 64.4
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.9e-137 492.7 407 66.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 8.3e-137 491.1 393 65.4
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.2e-135 487.3 420 64.0
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.0e-135 486.5 403 65.3
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 4.6e-135 485.3 469 57.1
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 8.6e-134 481.1 408 62.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 2.5e-133 479.6 399 63.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.5e-133 479.6 427 62.3
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 3.3e-133 479.2 416 62.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 2.3e-131 473.0 419 62.1
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 3.1e-131 472.6 420 60.0
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.5e-130 470.3 338 71.6
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.5e-130 470.3 423 60.3
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 5.8e-130 468.4 393 61.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.2e-129 466.5 396 60.6
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.9e-129 466.1 363 70.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 2.9e-129 466.1 421 60.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 6.4e-129 464.9 424 59.2
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.1e-128 464.2 424 59.4
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 5.4e-128 461.8 397 62.2
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 7.1e-128 461.5 399 60.7
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 7.1e-128 461.5 400 61.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 9.2e-128 461.1 404 60.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.6e-127 460.3 404 59.7
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 2.7e-127 459.5 366 65.3
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 4.6e-127 458.8 422 58.1
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 7.8e-127 458.0 366 65.0
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 7.8e-127 458.0 366 65.0
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.0e-126 457.6 363 65.8
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.7e-126 456.8 366 64.8
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 5.1e-126 455.3 424 58.5
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 8.6e-126 454.5 419 58.2
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 4.3e-125 452.2 401 60.3
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.8e-123 446.8 405 58.3
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.8e-123 446.8 444 58.6
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.3e-121 440.7 432 56.7
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.7e-121 440.3 429 56.9
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.2e-121 439.9 399 58.6
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-121 439.5 368 62.5
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 6.4e-121 438.3 413 58.1
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.1e-120 437.6 368 62.2
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-120 437.6 401 57.6
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-120 436.8 368 62.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.9e-120 436.8 406 57.4
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.9e-120 436.8 418 59.6
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 9.2e-120 434.5 424 55.9
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-119 433.7 325 69.5
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 6.0e-119 431.8 379 59.9
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.7e-118 430.3 326 68.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 5.1e-118 428.7 398 57.3
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 8.6e-118 427.9 414 55.8
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.2e-116 424.1 422 56.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.6e-116 423.7 342 64.9
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-116 423.3 401 56.6
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.2e-114 417.5 391 59.1
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.2e-113 413.3 429 54.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.2e-111 407.5 431 55.5
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 2.7e-111 406.4 437 54.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 7.8e-111 404.8 318 67.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.1e-107 394.4 412 55.1
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-106 390.2 342 61.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.9e-105 386.3 404 54.5
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-105 386.3 370 59.7
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 4.6e-103 379.0 334 61.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.5e-101 374.0 281 69.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.1e-100 368.2 281 69.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.3e-99 365.5 306 65.7
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 3.4e-98 362.8 298 62.8
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 4.2e-96 355.9 346 56.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 6.0e-95 352.1 448 49.1
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 9.0e-91 338.2 353 54.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.0e-90 337.0 328 55.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 3.4e-90 336.3 309 60.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 3.3e-85 319.7 319 57.7
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.5e-81 305.1 371 49.3
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 6.9e-67 258.8 211 61.1
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-65 253.4 216 61.1
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 8.2e-60 235.3 432 37.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.2e-56 223.4 392 38.5
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 4.2e-56 223.0 125 88.8
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.8e-54 217.6 148 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 2.4e-51 207.2 424 34.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 8.0e-47 192.2 124 77.4
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.5e-29 134.8 96 70.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.6e-26 123.2 102 68.6
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.0e-25 122.1 96 72.9
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.8e-22 111.3 89 64.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 3.1e-22 110.5 104 54.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 6.4e-20 102.8 105 53.3
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 6.6e-17 92.8 113 39.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.3e-14 84.3 154 37.0
Peaxi162Scf00684g00584 Petunia axillaris HOM05D005892 ORTHO05D007364 5.8e-13 79.7 109 54.1
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 3.3e-08 63.9 143 30.8
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 4.3e-08 63.5 95 38.9


User provided reference genes

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