Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 2318.5 1163 100.0
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 2059.6 1170 90.7
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1898.2 1115 85.7
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1867.8 1111 84.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1860.9 1111 84.6
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1736.9 1115 80.0
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1328.9 1146 61.3
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1264.6 1162 59.6
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1257.7 1136 59.4
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1256.1 1165 58.6
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1255.4 1142 59.6
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1253.4 1127 59.9
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1253.0 1135 59.1
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1231.1 1132 58.7
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1229.2 1133 59.3
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1220.7 1131 58.4
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1216.4 1132 57.8
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1214.9 1123 58.1
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1214.1 1123 58.3
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1212.2 1121 57.8
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1209.1 1139 57.7
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1209.1 1130 57.8
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1207.6 1123 58.1
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1199.5 1135 57.4
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1197.6 1118 58.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1197.6 1118 58.2
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1194.1 1153 56.9
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1193.3 1223 55.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1189.9 1126 57.7
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1187.2 1118 57.9
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1176.8 1148 56.8
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1169.1 1225 52.9
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1167.5 1077 59.0
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1167.1 1176 54.4
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1166.8 1124 57.1
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1156.0 1137 56.3
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1152.5 1134 54.5
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1152.1 1121 55.1
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1151.0 1117 56.5
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1149.8 1089 57.4
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1147.9 1143 55.1
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1142.5 1107 55.0
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1140.2 1163 55.0
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1137.5 1135 54.6
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1133.2 1130 54.5
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1129.8 1109 54.6
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1129.4 1130 54.4
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1129.0 1135 54.9
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1127.1 1129 54.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1126.3 1116 55.7
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1126.3 1120 54.3
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1125.2 1129 55.4
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1124.8 1121 54.7
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1124.0 1225 51.7
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1123.2 1121 55.3
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1120.5 1168 52.9
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1119.8 1131 54.8
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1116.7 1129 54.1
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1116.3 1124 55.2
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1111.7 1089 56.8
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1111.7 1125 54.4
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1109.4 1125 54.0
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1099.7 1125 53.9
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1097.8 1133 53.4
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1097.4 1125 54.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1094.7 1138 53.5
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1090.1 1122 54.0
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1090.1 1128 53.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1088.9 1151 54.1
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1087.8 1126 53.6
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1087.8 1126 53.6
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1087.0 1127 53.4
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1084.3 1156 52.4
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1084.3 1156 52.4
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1084.3 1156 52.4
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1082.0 1116 53.9
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1080.5 1122 53.0
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1076.2 1017 58.4
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 1.6e-310 1069.7 1124 52.8
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 3.5e-310 1068.5 1151 51.5
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 3.7e-307 1058.5 1137 52.8
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 6.0e-302 1041.2 1218 49.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 1.0e-301 1040.4 1118 53.1
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 5.6e-300 1034.6 1194 49.2
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 7.4e-300 1034.2 1113 52.6
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 2.8e-299 1032.3 1103 51.9
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 1.4e-295 1020.0 1125 50.3
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 1.4e-295 1020.0 1125 50.4
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 2.1e-294 1016.1 1128 51.4
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 8.2e-291 1004.2 1199 48.0
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 4.6e-286 988.4 1110 50.1
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 3.7e-283 978.8 1176 47.5
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 1.0e-272 944.1 1016 52.9
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 4.8e-267 925.2 1018 51.0
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 3.7e-243 845.9 1055 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 4.0e-205 719.5 1274 37.0
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.5e-178 629.4 485 69.3
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 1.6e-177 627.9 485 66.8
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.6e-153 547.0 604 50.2
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 7.2e-146 522.7 1054 34.8
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.8e-125 454.9 657 42.0
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 2.3e-107 394.8 513 43.9
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.9e-102 377.9 637 38.1
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 6.4e-102 376.7 407 49.9
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 7.2e-45 187.2 177 61.0
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 5.3e-32 144.4 109 59.6
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.8e-27 129.4 93 62.4
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 1.3e-22 113.2 81 67.9
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.3e-22 113.2 87 64.4
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 1.3e-22 113.2 87 64.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.2e-15 90.1 67 74.6
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.7e-15 89.0 52 75.0
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 5.0e-14 84.7 54 66.7
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.3e-11 75.9 47 61.7
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 5.9e-07 61.2 199 29.6
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.0e-06 60.5 72 50.0


User provided reference genes

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