Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 0.0e+00 2261.5 1129 100.0
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 0.0e+00 1707.2 1164 75.9
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 0.0e+00 1527.7 1150 70.2
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 0.0e+00 1507.3 1149 69.5
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1329.7 1132 64.9
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1320.8 1133 64.5
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 0.0e+00 1270.4 1116 62.5
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 0.0e+00 1268.1 1006 67.6
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 0.0e+00 1228.8 1128 59.3
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 3.6e-251 872.5 933 54.8
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 3.0e-141 507.3 1289 31.8
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 1.6e-137 495.0 1277 33.4
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 1.1e-117 429.1 1234 30.1
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 1.9e-106 391.7 1030 31.8
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 1.1e-98 365.9 1235 30.0
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 1.0e-80 306.2 1316 27.1
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 8.2e-78 296.6 984 29.8
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 3.1e-77 294.7 1310 27.2
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 5.8e-76 290.4 1228 26.5
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 4.2e-74 284.3 1143 29.5
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 3.0e-72 278.1 1211 27.6
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 9.7e-71 273.1 791 29.1
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 2.4e-69 268.5 1190 26.9
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 4.5e-68 264.2 1180 26.4
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 2.2e-67 261.9 991 27.3
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 8.5e-67 260.0 1292 26.0
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 2.7e-65 255.0 1185 27.2
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 5.1e-64 250.8 862 28.9
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 7.4e-63 246.9 1296 25.2
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.2e-62 245.4 1308 26.3
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 1.5e-60 239.2 1131 26.8
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 3.4e-60 238.0 1300 25.5
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 2.9e-59 235.0 1326 25.6
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 4.2e-58 231.1 1148 28.0
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 7.2e-58 230.3 759 27.9
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 7.2e-58 230.3 1313 25.4
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 2.8e-54 218.4 804 26.0
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 8.2e-54 216.9 1307 25.6
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.3e-51 209.5 1298 25.4
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 8.5e-51 206.8 999 25.2
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 5.5e-50 204.1 1326 23.5
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 6.1e-49 200.7 143 69.9
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 5.2e-48 197.6 1279 25.4
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.3e-47 194.9 1279 24.9
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.3e-46 193.0 1278 25.0
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 6.3e-46 190.7 969 26.1
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 7.7e-44 183.7 1285 24.5
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 2.9e-43 181.8 1312 24.2
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.8e-40 172.6 1250 24.6
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.7e-38 166.0 1333 23.5
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.2e-38 165.6 1357 22.8
MSTRG.6762 Avicennia marina HOM05D006994 ORTHO05D008229 1.7e-35 156.0 1114 23.6
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.7e-35 156.0 1168 23.5
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 8.0e-33 147.1 1254 23.0
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 8.0e-33 147.1 1038 24.0
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 8.0e-33 147.1 1263 22.9
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 9.8e-31 140.2 1265 22.5
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.7e-30 139.4 1236 23.2
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 2.4e-29 135.6 1266 21.9
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 1.7e-27 129.4 1191 24.7
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 3.8e-27 128.3 1196 22.6
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 3.0e-24 118.6 1232 22.4
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 3.4e-23 115.2 843 24.7
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 3.9e-19 101.7 756 24.2
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 5.0e-19 101.3 734 24.1
vmacro12443 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 3.6e-17 95.1 294 32.3
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 4.4e-15 88.2 624 23.9
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 9.8e-15 87.0 1123 22.5
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 2.9e-14 85.5 615 23.6
Atru.chr6.1475 Acer truncatum HOM05D006994 ORTHO05D008229 7.0e-13 80.9 103 42.7
Oeu014262.1 Olea europaea HOM05D006994 ORTHO05D008229 7.0e-13 80.9 215 32.1
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 1.3e-11 76.6 95 45.3
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 1.7e-11 76.3 117 38.5
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.7e-11 76.3 655 22.9
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 6.6e-11 74.3 242 33.1
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 8.6e-11 73.9 675 21.8
Thhalv10005808m.g Eutrema salsugineum HOM05D014107 ORTHO05D008229 2.5e-10 72.4 107 40.2
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 7.3e-10 70.9 653 23.4
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.6e-09 69.7 686 22.9
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 2.8e-09 68.9 621 22.2
Migut.H02109 Erythranthe guttata HOM05D006994 ORTHO05D008229 2.8e-09 68.9 58 51.7
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 6.2e-09 67.8 146 32.9
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.1e-08 67.0 554 23.1
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 1.1e-08 67.0 692 22.1
CARHR169160 Cardamine hirsuta HOM05D014107 ORTHO05D008229 1.4e-08 66.6 111 36.9
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 4.0e-08 65.1 634 21.6
AT3G58770 Arabidopsis thaliana HOM05D014107 ORTHO05D008229 5.2e-08 64.7 103 42.7
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 5.2e-08 64.7 200 29.0
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 6.8e-08 64.3 722 20.2
AL5G40540 Arabidopsis lyrata HOM05D014107 ORTHO05D008229 1.5e-07 63.2 99 40.4
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 4.4e-07 61.6 621 21.9
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.9e-06 58.9 58 56.9
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 3.7e-06 58.5 528 21.6
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 4.9e-06 58.2 231 25.5
CDE02G3671 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 6.4e-06 57.8 46 52.2
BcaC07g40294 Brassica carinata HOM05D014107 ORTHO05D003056 8.3e-06 57.4 88 40.9
C08p34100 Brassica napus HOM05D014107 ORTHO05D003056 8.3e-06 57.4 88 40.9


User provided reference genes

Program Settings