Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 0.0e+00 1450.3 795 100.0
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 0.0e+00 1331.2 795 94.1
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 0.0e+00 1246.5 742 93.5
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 0.0e+00 1218.4 795 82.3
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 0.0e+00 1182.2 799 81.0
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 0.0e+00 1163.7 807 79.2
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 0.0e+00 1151.0 795 79.6
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 0.0e+00 1139.8 797 78.9
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 4.5e-264 914.8 830 62.8
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 2.2e-263 912.5 830 62.7
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 1.6e-258 896.3 815 64.8
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 2.1e-258 896.0 810 63.1
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.1e-257 893.6 810 65.2
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 3.8e-255 885.2 818 62.1
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 2.5e-254 882.5 818 61.6
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 2.7e-253 879.0 793 62.3
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 2.1e-250 869.4 809 64.0
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 1.2e-248 863.6 828 60.0
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 3.8e-247 858.6 833 59.9
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 6.5e-247 857.8 572 82.2
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 1.1e-246 857.1 815 60.5
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 1.4e-246 856.7 856 57.5
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 3.5e-245 852.0 803 60.3
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 8.7e-244 847.4 810 61.2
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 1.5e-243 846.7 827 58.5
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 3.3e-243 845.5 809 59.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 4.3e-243 845.1 830 63.5
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.4e-241 840.1 798 60.5
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 1.8e-241 839.7 824 59.0
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 3.1e-241 839.0 801 62.3
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 4.1e-241 838.6 828 58.1
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 9.0e-241 837.4 812 63.1
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 9.0e-241 837.4 826 61.0
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 5.9e-240 834.7 835 59.5
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 2.9e-239 832.4 815 59.4
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 5.0e-239 831.6 825 61.5
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 7.2e-238 827.8 820 58.5
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 7.2e-238 827.8 822 59.0
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 9.4e-238 827.4 807 59.6
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 7.9e-237 824.3 837 58.7
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.0e-236 823.9 827 58.5
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.0e-236 823.9 826 61.1
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 1.5e-235 820.1 826 57.1
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 2.5e-235 819.3 787 60.2
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 4.3e-235 818.5 831 58.1
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 7.4e-235 817.8 841 60.4
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 9.7e-235 817.4 803 58.5
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 1.3e-234 817.0 823 58.1
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.2e-234 816.2 798 59.3
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 3.7e-234 815.5 789 58.8
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 4.8e-234 815.1 840 56.2
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 6.9e-233 811.2 824 57.8
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 1.7e-231 806.6 827 60.0
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 2.9e-231 805.8 836 55.0
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 8.5e-231 804.3 827 59.3
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 8.5e-231 804.3 830 57.5
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 1.2e-229 800.4 831 57.2
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 1.6e-229 800.0 847 55.1
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 2.1e-229 799.7 715 63.4
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 7.9e-229 797.7 824 57.2
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.0e-228 795.8 839 54.7
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 1.1e-227 793.9 816 59.4
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 7.4e-227 791.2 806 57.7
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 6.3e-226 788.1 830 56.1
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 1.8e-225 786.6 699 63.4
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 4.1e-225 785.4 696 62.9
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 4.1e-225 785.4 815 59.3
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 5.3e-225 785.0 798 59.8
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 5.3e-225 785.0 805 61.4
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 1.5e-224 783.5 807 59.2
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 5.0e-223 778.5 867 54.3
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 8.5e-223 777.7 787 57.4
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 4.7e-221 771.9 831 56.7
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.1e-221 771.5 803 57.2
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 2.3e-220 769.6 850 54.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 3.9e-220 768.8 808 56.8
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.2e-220 768.5 790 59.2
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 5.2e-220 768.5 832 58.4
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 3.3e-219 765.8 834 55.6
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.3e-218 763.8 652 63.7
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 3.7e-218 762.3 834 55.4
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.6e-216 756.9 835 56.4
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 1.7e-215 753.4 827 55.6
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 3.8e-215 752.3 627 65.1
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.9e-214 750.0 714 60.5
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.4e-212 743.8 647 62.6
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.3e-212 743.0 841 54.2
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.5e-211 740.3 834 55.3
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 2.6e-211 739.6 819 54.5
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.7e-210 735.7 650 61.2
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 3.7e-210 735.7 816 58.2
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 8.3e-210 734.6 803 57.0
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 7.0e-209 731.5 677 60.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 4.0e-204 715.7 814 53.7
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 4.9e-202 708.8 815 55.8
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 7.0e-201 704.9 810 51.0
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.9e-199 699.5 835 50.4
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 8.0e-197 691.4 597 63.0
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 5.2e-196 688.7 814 53.3
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 5.4e-193 678.7 813 51.4
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 2.9e-191 672.9 831 49.9
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 5.0e-191 672.2 788 56.0
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 2.3e-172 610.1 746 54.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 6.8e-164 582.0 667 49.0
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 4.9e-162 575.9 695 48.6
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 4.9e-162 575.9 888 43.7
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.5e-152 543.1 637 51.6
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 5.3e-148 529.3 794 43.6
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 1.9e-145 520.8 369 72.1
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.8e-143 514.2 398 68.1
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 1.3e-141 508.1 803 42.6
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 2.5e-137 493.8 789 40.7
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 1.9e-126 457.6 354 69.8
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 3.7e-117 426.8 346 64.7
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.0e-111 408.7 641 40.1
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 1.1e-110 405.2 532 49.1
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.7e-104 383.3 282 70.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 4.1e-100 370.2 786 35.6
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 3.3e-73 280.8 714 33.9
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.4e-70 270.4 411 42.3
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 3.0e-66 257.7 683 30.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 1.1e-65 255.8 201 69.7
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 3.1e-55 221.1 210 61.9
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 2.9e-53 214.5 159 70.4
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 8.4e-53 213.0 140 72.9
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 1.7e-45 188.7 548 31.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 7.3e-41 173.3 167 62.9
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 8.7e-34 149.8 159 54.7
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 9.6e-33 146.4 154 57.1
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 4.2e-28 131.0 149 53.7
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.3e-26 125.9 91 70.3
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 1.1e-25 122.9 66 81.8
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.3e-18 99.4 210 42.4
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 1.8e-18 99.0 90 54.4
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.3e-18 98.6 226 40.3
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 6.7e-18 97.1 58 77.6
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 4.3e-17 94.4 51 88.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.3e-08 66.2 206 34.0
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.8e-07 62.4 38 78.9
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 2.4e-07 62.0 39 71.8
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 2.4e-07 62.0 39 71.8
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 9.1e-07 60.1 39 69.2
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 9.1e-07 60.1 39 69.2
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 2.0e-06 58.9 39 66.7


User provided reference genes

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