Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 2.8e-158 562.0 308 100.0
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 4.9e-142 508.1 325 88.0
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 3.0e-123 445.7 319 78.7
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 6.6e-123 444.5 319 78.4
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 3.4e-119 432.2 327 78.9
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 3.2e-109 399.1 262 85.5
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 2.8e-97 359.4 300 72.3
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 8.4e-86 321.2 319 60.5
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 8.4e-86 321.2 256 69.5
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 1.6e-84 317.0 313 58.1
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 4.6e-84 315.5 310 59.0
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 4.6e-84 315.5 326 58.0
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.0e-83 314.3 326 57.1
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 1.3e-83 313.9 324 57.4
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 1.9e-82 310.1 324 57.1
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 9.7e-82 307.8 294 61.6
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 9.7e-82 307.8 294 61.6
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 9.7e-82 307.8 322 57.8
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 3.7e-81 305.8 323 56.3
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 3.1e-80 302.8 294 60.9
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 4.1e-80 302.4 322 57.1
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 6.9e-80 301.6 292 59.2
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 9.0e-80 301.2 325 55.7
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 2.0e-79 300.1 284 59.5
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 2.0e-79 300.1 260 63.5
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 2.6e-79 299.7 246 68.3
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 1.7e-78 297.0 327 54.1
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 2.2e-78 296.6 256 63.7
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 2.5e-77 293.1 267 60.3
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 2.5e-77 293.1 321 55.5
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 4.2e-77 292.4 258 64.0
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 5.5e-77 292.0 261 63.2
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 5.5e-77 292.0 292 57.5
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 7.2e-77 291.6 245 64.9
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 1.2e-76 290.8 253 64.0
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 7.9e-76 288.1 291 59.1
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.8e-75 287.0 260 62.3
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 3.0e-75 286.2 367 49.3
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 1.5e-74 283.9 300 55.0
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 2.5e-74 283.1 306 53.6
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 3.3e-74 282.7 261 61.3
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 5.7e-74 282.0 287 58.5
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.7e-73 280.4 247 65.2
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 4.8e-73 278.9 306 54.2
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 6.3e-73 278.5 335 51.9
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 4.1e-72 275.8 317 52.4
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 6.9e-72 275.0 277 56.7
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 3.4e-71 272.7 319 53.9
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 4.5e-71 272.3 268 60.4
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 7.7e-71 271.6 252 59.5
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 2.9e-70 269.6 261 61.3
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 1.1e-69 267.7 305 52.5
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 1.9e-69 266.9 248 59.7
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 2.5e-69 266.5 310 52.6
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 3.2e-69 266.2 257 58.8
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 5.5e-69 265.4 308 50.6
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 7.2e-69 265.0 317 52.4
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 2.1e-68 263.5 284 54.6
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 2.7e-68 263.1 252 59.5
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 3.6e-68 262.7 304 53.6
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 3.6e-68 262.7 301 51.5
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 4.7e-68 262.3 280 57.1
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 6.1e-68 261.9 261 57.9
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 7.9e-68 261.5 261 57.5
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 1.0e-67 261.2 253 58.5
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.3e-67 260.0 318 51.3
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.5e-66 257.3 304 51.0
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 2.0e-66 256.9 304 51.0
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 2.0e-66 256.9 304 51.0
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 2.0e-66 256.9 304 51.0
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 4.4e-66 255.8 254 56.7
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 5.7e-66 255.4 304 51.0
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 5.7e-66 255.4 279 53.0
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 1.3e-65 254.2 301 50.5
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.3e-65 254.2 291 51.2
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 1.3e-65 254.2 251 57.8
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 8.2e-65 251.5 291 50.9
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 8.2e-65 251.5 257 56.8
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 1.4e-64 250.8 260 57.7
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 1.8e-64 250.4 260 57.3
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 3.1e-64 249.6 302 50.3
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 5.3e-64 248.8 308 49.7
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 9.1e-64 248.1 260 55.4
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 3.5e-63 246.1 306 49.3
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 3.5e-63 246.1 304 50.3
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 1.7e-62 243.8 278 52.2
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 6.5e-62 241.9 314 48.7
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 2.5e-61 240.0 256 53.5
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 3.9e-59 232.6 245 53.5
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 6.7e-59 231.9 264 50.8
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 1.1e-58 231.1 258 52.7
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 3.1e-56 223.0 214 60.3
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 3.5e-55 219.5 317 46.1
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 3.8e-54 216.1 279 49.8
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 1.6e-52 210.7 247 53.8
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 1.4e-51 207.6 289 44.3
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 1.5e-50 204.1 257 50.6
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 4.8e-49 199.1 297 42.8
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 5.3e-48 195.7 179 58.7
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.7e-44 183.3 230 51.3
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 7.5e-42 175.3 181 54.1
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.1e-40 171.4 224 47.3
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 5.9e-39 165.6 245 44.9
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 4.7e-36 156.0 294 39.5
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 2.6e-34 150.2 234 42.3
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 1.3e-33 147.9 266 41.0
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 8.6e-30 135.2 153 56.2
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.9e-29 134.0 145 56.6
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 2.5e-29 133.7 116 64.7
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 2.9e-25 120.2 252 36.1
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 9.5e-21 105.1 307 31.6
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 1.1e-19 101.7 139 41.7
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 2.3e-19 100.5 233 35.6
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 1.2e-18 98.2 135 49.6
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 2.6e-18 97.1 233 33.0
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 9.8e-18 95.1 234 32.1
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 6.8e-11 72.4 140 45.0
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 3.4e-10 70.1 261 31.4
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.2e-09 67.4 111 38.7


User provided reference genes

Program Settings