Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.4e-257 890.6 561 100.0
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 2.9e-233 812.0 557 91.6
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.4e-211 739.2 569 83.8
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.6e-210 735.7 569 83.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 9.3e-200 700.7 558 81.7
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.1e-159 566.6 473 77.6
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 8.0e-159 564.7 481 77.5
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 1.4e-158 563.9 439 82.0
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 6.8e-158 561.6 500 74.6
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 7.0e-155 551.6 498 75.1
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.3e-153 547.4 423 77.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 1.9e-152 543.5 438 82.0
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.9e-152 543.5 558 68.1
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.2e-151 540.8 463 71.9
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.5e-149 533.9 603 57.4
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.6e-149 533.1 454 76.9
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 3.4e-149 532.7 481 75.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 3.7e-148 529.3 458 70.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 4.9e-148 528.9 457 77.0
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 6.3e-148 528.5 435 73.8
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.4e-147 527.3 501 71.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.8e-147 526.9 486 68.9
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.4e-147 526.6 499 71.3
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 3.1e-147 526.2 462 76.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.1e-147 526.2 441 73.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 5.4e-147 525.4 481 69.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 5.4e-147 525.4 460 70.9
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.4e-147 525.4 465 74.6
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 2.0e-146 523.5 485 70.7
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.0e-146 523.5 464 74.1
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.7e-146 523.1 482 68.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.5e-146 522.7 456 75.0
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 4.5e-146 522.3 573 65.1
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.9e-145 519.6 460 74.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.8e-145 519.2 574 60.5
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 3.8e-145 519.2 434 78.8
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 5.0e-145 518.8 481 70.9
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.6e-145 518.5 463 63.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.1e-144 517.7 558 68.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.1e-144 517.7 447 70.9
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 2.5e-144 516.5 472 67.6
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 2.5e-144 516.5 476 71.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.3e-144 515.8 464 73.5
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.6e-144 515.4 435 71.0
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.6e-144 515.4 525 68.6
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 5.6e-144 515.4 602 54.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 5.6e-144 515.4 484 71.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 5.6e-144 515.4 480 67.5
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 7.3e-144 515.0 466 74.9
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 9.5e-144 514.6 467 68.3
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 9.5e-144 514.6 453 70.2
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-143 514.2 485 66.6
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-143 514.2 485 70.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 1.6e-143 513.8 471 72.4
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 1.6e-143 513.8 472 67.6
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.1e-143 511.9 471 73.5
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.4e-142 510.8 496 66.1
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.8e-142 510.4 442 71.0
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.8e-142 510.4 466 73.8
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 5.2e-142 508.8 488 69.5
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.0e-141 506.9 448 69.2
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.4e-141 505.8 455 75.2
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 9.8e-141 504.6 455 74.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-140 503.1 482 73.2
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.1e-139 499.2 455 73.8
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 5.4e-139 498.8 423 73.5
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 2.7e-138 496.5 467 68.3
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 4.6e-138 495.7 463 71.7
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 2.3e-137 493.4 433 72.3
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.0e-137 493.0 461 70.1
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 5.0e-137 492.3 425 71.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 6.6e-137 491.9 394 82.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.1e-136 491.1 445 66.1
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.1e-136 491.1 403 73.2
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 3.3e-136 489.6 483 67.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 4.3e-136 489.2 459 67.8
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 5.6e-136 488.8 457 70.5
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 5.6e-136 488.8 457 70.5
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.2e-135 487.6 466 69.1
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.6e-135 487.3 487 64.5
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.6e-135 486.1 455 72.5
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 4.7e-135 485.7 567 53.3
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.4e-134 484.2 434 73.5
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.8e-134 483.8 453 70.4
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 3.1e-134 483.0 453 70.4
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 5.2e-134 482.3 447 70.0
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.2e-134 482.3 460 69.6
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 6.8e-134 481.9 629 50.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-133 480.7 483 70.0
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 9.8e-133 478.0 564 63.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.3e-132 477.6 561 60.4
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.9e-132 475.7 480 69.4
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 7.0e-131 471.9 493 62.1
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.2e-131 471.5 500 67.6
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 1.2e-130 471.1 485 68.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 4.6e-130 469.2 534 63.3
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 1.0e-129 468.0 399 71.9
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.7e-129 467.2 379 73.6
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 5.6e-128 462.2 485 68.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.6e-127 459.5 447 66.2
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.1e-126 456.4 412 74.5
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 4.0e-126 456.1 351 71.5
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.2e-125 454.5 434 72.4
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-124 450.7 419 74.2
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 2.9e-124 449.9 485 61.0
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.4e-123 446.8 456 63.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 7.1e-123 445.3 392 75.5
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.3e-121 440.3 480 68.8
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.9e-121 439.5 460 67.6
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.8e-119 433.3 416 72.4
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 3.6e-119 433.0 485 65.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.4e-118 431.0 440 70.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 3.8e-116 422.9 446 62.8
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 5.2e-110 402.5 392 73.7
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.9e-108 396.7 434 60.6
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 7.1e-107 392.1 413 62.5
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.2e-106 391.3 394 68.3
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.7e-98 363.6 566 51.1
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.0e-98 362.5 342 67.0
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.1e-96 358.2 362 75.7
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.8e-94 350.9 326 66.6
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 2.0e-93 347.4 341 74.2
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.4e-91 341.3 389 59.9
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.4e-85 320.1 342 58.2
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.0e-81 308.5 601 43.9
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.8e-81 307.8 391 56.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.9e-77 292.7 277 57.4
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 7.6e-77 292.4 285 77.2
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 4.2e-75 286.6 236 65.7
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.5e-72 278.1 497 46.5
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 5.9e-61 239.6 377 40.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.5e-53 213.4 135 80.0
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-51 208.4 151 68.9
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.2e-47 192.6 140 67.1
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-46 191.0 140 66.4
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.2e-45 188.7 177 57.1
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.5e-45 187.2 140 65.0
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.7e-40 169.9 167 55.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.4e-38 164.5 134 59.7
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.4e-38 163.3 134 59.7
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.4e-33 148.7 171 50.9
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.4e-33 148.7 95 80.0
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-32 145.6 128 58.6
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.2e-25 120.2 73 76.7
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 5.2e-25 120.2 104 57.7
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.4e-22 111.3 90 58.9
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 7.3e-19 99.8 209 33.0
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 9.5e-19 99.4 494 23.9
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 3.1e-17 94.4 54 81.5
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 2.2e-15 88.2 55 74.5
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.2e-13 82.4 71 64.8
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 6.0e-13 80.1 52 78.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 3.1e-09 67.8 57 61.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 7.1e-06 56.6 123 35.8


User provided reference genes

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