Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.4e-133 478.8 230 100.0
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 9.0e-125 450.3 235 92.8
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.2e-124 449.9 235 92.8
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 5.8e-124 447.6 235 92.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 5.8e-124 447.6 235 92.3
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 3.8e-123 444.9 235 91.5
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 2.3e-120 435.6 255 84.3
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 2.1e-113 412.5 231 85.3
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 4.6e-113 411.4 225 85.3
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.0e-112 410.2 226 84.1
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.0e-112 410.2 229 83.4
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 5.1e-112 407.9 225 84.9
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 6.7e-112 407.5 224 85.3
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.5e-111 406.4 228 82.5
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 3.3e-111 405.2 224 86.2
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 4.3e-111 404.8 222 85.6
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 5.7e-111 404.4 224 85.7
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 7.4e-111 404.1 222 84.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 9.7e-111 403.7 222 84.7
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.3e-110 403.3 223 84.3
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.8e-110 402.1 221 84.6
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.7e-110 401.7 227 83.7
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 3.7e-110 401.7 237 81.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 4.8e-110 401.4 225 83.1
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 4.8e-110 401.4 224 85.3
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 4.8e-110 401.4 225 83.6
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 4.8e-110 401.4 227 81.9
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 2.4e-109 399.1 219 85.8
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 3.1e-109 398.7 222 83.8
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 3.1e-109 398.7 223 83.0
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 3.1e-109 398.7 225 83.1
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 5.3e-109 397.9 225 83.6
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 9.0e-109 397.1 227 81.5
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 9.0e-109 397.1 229 81.7
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 9.0e-109 397.1 225 82.7
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.2e-108 396.7 226 82.3
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.2e-108 396.7 229 81.2
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 1.2e-108 396.7 223 84.3
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 1.5e-108 396.4 225 82.2
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.6e-108 395.6 221 84.2
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 4.5e-108 394.8 224 82.6
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 7.7e-108 394.0 224 80.8
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 7.7e-108 394.0 255 74.5
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 7.7e-108 394.0 225 80.4
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 7.7e-108 394.0 225 80.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.3e-107 393.3 225 81.3
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 1.3e-107 393.3 225 82.2
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 2.2e-107 392.5 224 82.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 2.2e-107 392.5 225 80.9
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 2.9e-107 392.1 225 82.2
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.8e-107 391.7 225 81.3
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 3.8e-107 391.7 224 83.5
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 5.0e-107 391.3 221 83.3
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 6.5e-107 391.0 222 82.0
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 6.5e-107 391.0 224 80.8
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 6.5e-107 391.0 223 81.6
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 223 81.6
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-106 389.8 225 81.8
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.4e-106 389.8 225 81.3
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.9e-106 389.4 222 83.3
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 2.5e-106 389.0 224 81.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 2.5e-106 389.0 224 81.2
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.2e-106 388.7 224 81.7
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 9.4e-106 387.1 221 84.2
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.4e-106 387.1 224 82.1
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 9.4e-106 387.1 224 81.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 2.7e-105 385.6 223 81.6
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 3.6e-105 385.2 215 83.7
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 3.6e-105 385.2 223 80.7
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 3.6e-105 385.2 222 81.1
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 6.1e-105 384.4 224 79.9
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 6.1e-105 384.4 224 79.9
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 7.9e-105 384.0 224 79.9
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 1.0e-104 383.6 216 82.9
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 1.0e-104 383.6 225 80.0
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.0e-104 383.6 225 79.6
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.4e-104 383.3 221 80.5
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 1.8e-104 382.9 224 81.2
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.3e-104 382.5 224 79.5
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 3.0e-104 382.1 221 80.1
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 3.9e-104 381.7 224 79.9
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 8.8e-104 380.6 225 79.1
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 1.5e-103 379.8 223 79.8
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-103 379.8 223 79.8
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 1.5e-103 379.8 223 79.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 1.5e-103 379.8 224 79.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 1.9e-103 379.4 227 77.5
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 2.5e-103 379.0 224 80.4
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 2.5e-103 379.0 224 79.5
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.3e-103 378.3 279 68.1
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 4.3e-103 378.3 224 79.0
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.4e-103 377.5 225 78.7
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 7.4e-103 377.5 224 79.0
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 7.4e-103 377.5 211 83.9
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 1.3e-102 376.7 225 77.8
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.3e-102 376.7 224 79.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.7e-102 376.3 224 77.7
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 2.2e-102 375.9 225 78.7
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.8e-102 375.6 221 79.2
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 3.7e-102 375.2 227 76.2
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 6.3e-102 374.4 224 79.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 6.3e-102 374.4 224 78.6
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 6.3e-102 374.4 216 81.5
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 6.3e-102 374.4 211 82.9
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 6.3e-102 374.4 224 78.1
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 8.2e-102 374.0 225 77.8
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 8.2e-102 374.0 224 77.7
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 1.4e-101 373.2 224 78.1
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 5.3e-101 371.3 224 78.1
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 6.9e-101 370.9 224 78.1
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 6.9e-101 370.9 224 78.1
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.0e-100 369.4 225 76.9
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.0e-100 369.4 221 77.8
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.2e-99 365.9 225 76.4
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 3.8e-99 365.2 227 74.9
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 9.4e-98 360.5 224 76.8
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.5e-92 343.2 208 78.8
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.6e-92 342.4 218 70.6
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 3.8e-91 338.6 228 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.2e-88 328.2 229 67.2
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.4e-85 320.1 217 66.4
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 5.3e-85 318.2 223 66.8
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 2.7e-81 305.8 220 64.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 1.5e-74 283.5 161 85.1
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.9e-74 283.1 164 84.8
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.4e-72 276.9 164 75.6
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-72 276.6 148 85.8
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.7e-70 268.9 157 76.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 5.5e-66 255.0 213 56.8
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 2.6e-63 246.1 131 82.4
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.7e-62 242.3 158 72.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 5.9e-60 235.0 129 84.5
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 6.1e-57 224.9 211 54.0
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 1.8e-56 223.4 214 51.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 1.7e-54 216.9 143 78.3
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.0e-52 209.9 218 46.3
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 4.7e-49 198.7 113 79.6
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.4e-48 197.2 115 75.7
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 6.8e-48 194.9 111 83.8
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.1e-40 171.0 130 59.2
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 1.1e-37 161.0 88 77.3
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 4.6e-36 155.6 102 72.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.5e-31 140.6 212 37.7
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 3.4e-31 139.4 97 73.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.0e-27 127.9 128 49.2
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 9.6e-26 121.3 74 79.7
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.1e-25 120.2 83 66.3
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.1e-25 118.2 61 86.9
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 2.0e-23 113.6 56 89.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 5.8e-23 112.1 78 75.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.8e-22 109.4 76 65.8
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 1.4e-21 107.5 61 88.5
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 6.0e-20 102.1 58 84.5
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.9e-19 99.4 61 80.3
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.6e-18 95.5 64 71.9
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 5.6e-18 95.5 58 81.0
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 2.8e-17 93.2 54 79.6
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.5e-15 87.4 54 81.5
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.8e-15 85.5 123 45.5
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.1e-12 77.0 51 72.5
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 2.7e-12 76.6 100 43.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.6e-09 67.4 36 77.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 5.8e-07 58.9 35 80.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 1.0e-06 58.2 43 69.8


User provided reference genes

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