Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.0e-254 882.9 437 100.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.2e-240 834.7 437 93.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 5.7e-229 797.3 437 89.0
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.9e-225 785.0 437 87.6
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.2e-223 779.6 437 87.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.6e-223 779.2 437 87.6
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 6.3e-220 767.3 439 86.1
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.6e-186 656.4 447 71.6
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 7.8e-186 654.1 441 72.3
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 8.6e-185 650.6 447 70.9
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-181 640.2 441 70.1
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 9.9e-181 637.1 436 72.0
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.7e-180 636.3 445 71.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.9e-180 635.6 441 70.3
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.0e-177 627.1 440 70.9
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 6.6e-177 624.4 448 68.8
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 8.6e-177 624.0 448 70.3
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.4e-174 615.9 447 68.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.1e-174 615.5 442 69.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.0e-174 615.1 448 68.8
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.4e-173 611.7 444 68.9
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 5.8e-173 611.3 447 69.1
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.3e-172 610.1 445 67.0
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 1.7e-172 609.8 440 68.0
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.4e-172 607.4 442 68.6
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.4e-171 606.7 443 67.3
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.2e-171 605.1 447 68.5
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 7.1e-171 604.4 443 67.9
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.6e-170 603.2 446 67.7
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 6.0e-170 601.3 446 66.6
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.6e-169 597.8 447 67.6
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 4.3e-168 595.1 448 65.6
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 3.6e-167 592.0 445 66.7
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.6e-167 592.0 447 65.8
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 8.1e-167 590.9 446 65.5
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.5e-165 586.6 445 66.3
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.3e-164 583.6 436 67.7
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 6.4e-164 581.3 433 65.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.1e-163 580.5 444 65.3
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.2e-163 578.6 448 65.4
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 5.4e-163 578.2 447 63.5
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 5.4e-163 578.2 426 66.4
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 5.4e-163 578.2 442 65.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 7.1e-163 577.8 451 64.3
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 9.3e-163 577.4 436 66.5
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 9.3e-163 577.4 429 67.1
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 9.3e-163 577.4 448 65.2
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.6e-162 576.6 445 64.7
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 6.0e-162 574.7 449 63.7
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 7.8e-162 574.3 436 66.3
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 7.8e-162 574.3 432 66.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.0e-161 572.4 440 64.5
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.9e-161 572.0 451 63.6
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 5.1e-161 571.6 447 63.3
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 9.6e-160 567.4 432 63.0
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.8e-159 565.1 444 64.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 6.2e-159 564.7 431 64.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 8.1e-159 564.3 430 64.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 2.4e-158 562.8 430 64.7
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-158 562.8 444 63.3
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.4e-158 562.8 444 64.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 3.1e-158 562.4 432 61.8
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 5.3e-158 561.6 444 62.6
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 6.9e-158 561.2 410 66.6
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 6.9e-158 561.2 433 62.4
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.5e-157 560.1 434 62.7
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 4.5e-157 558.5 408 66.7
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 5.8e-157 558.1 435 62.3
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 3.8e-156 555.4 440 63.2
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 3.8e-156 555.4 440 63.2
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.9e-156 555.1 411 67.9
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 4.9e-156 555.1 422 63.0
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 6.4e-156 554.7 433 64.2
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 9.3e-155 550.8 432 63.0
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.1e-154 549.7 435 63.4
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 4.6e-154 548.5 425 64.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.3e-153 547.0 398 68.3
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.8e-153 546.6 379 68.3
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-153 544.3 432 64.8
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-153 544.3 432 64.8
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.8e-151 539.3 441 61.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 6.2e-151 538.1 411 63.0
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.1e-150 535.8 459 60.8
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.4e-149 532.3 340 74.7
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-148 529.6 402 64.7
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.9e-148 529.3 457 58.2
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.9e-148 529.3 430 61.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 8.4e-148 527.7 452 60.4
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.4e-147 526.9 423 61.5
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.9e-147 526.6 440 61.1
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 7.1e-147 524.6 428 61.9
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 9.3e-147 524.2 433 60.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.8e-145 520.0 342 71.1
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.0e-145 519.2 442 61.5
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 8.7e-145 517.7 444 60.8
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.8e-143 512.7 430 61.9
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 4.8e-143 511.9 431 58.9
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 4.8e-143 511.9 445 60.4
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 6.9e-142 508.1 434 60.8
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.5e-141 506.9 435 58.2
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.0e-141 506.5 437 60.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 4.5e-141 505.4 438 60.0
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.0e-140 504.2 441 59.6
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.0e-140 504.2 441 59.6
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.7e-140 503.4 423 62.2
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 7.1e-139 498.0 437 60.4
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 9.3e-139 497.7 438 60.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.2e-138 497.3 374 63.1
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.6e-138 496.9 446 58.1
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 2.7e-138 496.1 429 60.8
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 4.6e-138 495.4 374 62.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.0e-137 494.2 429 60.8
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.0e-137 494.2 429 60.8
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.3e-137 493.0 439 59.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.0e-137 492.7 350 65.7
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-136 490.7 446 57.4
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.3e-136 489.2 439 56.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 4.3e-136 488.8 426 60.3
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.7e-135 485.7 350 66.0
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.1e-134 484.2 361 66.5
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.1e-134 482.3 376 61.4
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 2.0e-133 479.9 408 57.8
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.3e-128 462.6 350 64.6
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.5e-125 452.2 438 55.5
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 2.1e-122 443.4 319 65.2
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 8.2e-119 431.4 323 62.2
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.0e-110 401.7 343 61.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 6.1e-106 388.7 275 66.2
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 6.1e-106 388.7 275 66.2
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.2e-103 380.2 377 54.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.2e-93 347.8 426 45.5
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.3e-92 343.6 376 48.7
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 4.6e-77 292.7 233 60.1
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 4.3e-67 259.6 190 65.3
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.1e-66 257.3 370 44.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.2e-63 247.3 244 53.7
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 8.4e-63 245.4 160 68.8
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.3e-60 237.3 164 68.9
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 2.2e-55 220.7 257 49.8
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 3.8e-39 166.8 151 55.6
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.4e-39 165.6 107 71.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 9.3e-30 135.6 138 52.9
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.3e-27 126.7 98 58.2
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 1.6e-26 124.8 171 44.4
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 1.8e-25 121.3 171 43.3
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.8e-09 68.2 61 54.1
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 3.1e-09 67.4 52 57.7


User provided reference genes

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