Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007030g0030 Nicotiana tabacum HOM05D002678 ORTHO05D002920 3.0e-47 191.8 119 100.0
Sopen11g030550 Solanum pennellii HOM05D002678 ORTHO05D002920 5.7e-30 134.4 100 84.0
Solyc11g072890.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 3.7e-29 131.7 99 79.8
PGSC0003DMG400015526 Solanum tuberosum HOM05D002678 ORTHO05D002920 2.6e-27 125.6 104 78.8
Sopen06g031980 Solanum pennellii HOM05D002678 ORTHO05D002920 1.3e-23 113.2 98 63.3
Nitab4.5_0004370g0030 Nicotiana tabacum HOM05D002678 ORTHO05D002920 6.7e-23 110.9 84 82.1
PGSC0003DMG400030480 Solanum tuberosum HOM05D002678 ORTHO05D002920 4.3e-22 108.2 98 71.4
Oeu058517.1 Olea europaea HOM05D002678 ORTHO05D002920 4.8e-21 104.8 102 69.6
Oeu040266.1 Olea europaea HOM05D002678 ORTHO05D002920 8.2e-21 104.0 102 67.6
Nitab4.5_0000182g0070 Nicotiana tabacum HOM05D002678 ORTHO05D002920 4.1e-20 101.7 106 68.9
Nitab4.5_0000270g0250 Nicotiana tabacum HOM05D002678 ORTHO05D002920 4.5e-19 98.2 107 67.3
Hma1.2p1_0746F.1_g212310 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 7.7e-19 97.4 98 54.1
Potri.016G081600 Populus trichocarpa HOM05D002678 ORTHO05D002920 1.0e-18 97.1 97 56.7
Glyma.03G175100 Glycine max HOM05D002678 ORTHO05D002920 2.9e-18 95.5 97 53.6
Migut.N02647 Erythranthe guttata HOM05D002678 ORTHO05D002920 3.8e-18 95.1 97 52.6
Glyma.19G175800 Glycine max HOM05D002678 ORTHO05D002920 3.8e-18 95.1 97 53.6
Cc01_g12070 Coffea canephora HOM05D002678 ORTHO05D002920 8.5e-18 94.0 109 67.0
Lalb_Chr02g0153371 Lupinus albus HOM05D002678 ORTHO05D002920 8.5e-18 94.0 97 52.6
VMungo1383G3255 Vigna mungo HOM05D002678 ORTHO05D002920 1.4e-17 93.2 97 53.6
arahy.Tifrunner.gnm1.ann1.X1SQMY Arachis hypogaea HOM05D002678 ORTHO05D002920 1.9e-17 92.8 97 51.5
Phvul.001G172100 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 2.5e-17 92.4 97 53.6
Sabra16G0089400 Salix brachista HOM05D002678 ORTHO05D002920 2.5e-17 92.4 97 54.6
Hma1.2p1_0035F.1_g021820 Hydrangea macrophylla HOM05D002678 ORTHO05D002920 7.2e-17 90.9 99 62.6
Rhsim13G0088900 Rhododendron simsii HOM05D002678 ORTHO05D002920 7.2e-17 90.9 98 52.0
CSS0019295 Camellia sinensis var. sinensis HOM05D002678 ORTHO05D002920 1.2e-16 90.1 102 59.8
HanXRQChr04g0110311 Helianthus annuus HOM05D002678 ORTHO05D002920 1.2e-16 90.1 107 62.6
Lalb_Chr25g0289391 Lupinus albus HOM05D002678 ORTHO05D002920 1.2e-16 90.1 97 51.5
Lj1g0018959 Lotus japonicus HOM05D002678 ORTHO05D002920 1.6e-16 89.7 103 50.5
Ca_11435_v3 Cicer arietinum L. HOM05D002678 ORTHO05D002920 3.6e-16 88.6 97 51.5
Gohir.D07G099200 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.9e-16 87.4 97 48.5
MELO3C025706.2 Cucumis melo HOM05D002678 ORTHO05D002920 1.0e-15 87.0 109 50.5
CsaV3_6G022030 Cucumis sativus L. HOM05D002678 ORTHO05D002920 1.0e-15 87.0 97 53.6
Duzib150G0336 Durio zibethinus HOM05D002678 ORTHO05D002920 1.0e-15 87.0 96 47.9
TWI75G0718 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 1.0e-15 87.0 96 47.9
Manes.08G073300 Manihot esculenta HOM05D002678 ORTHO05D002920 1.4e-15 86.7 96 53.1
Thecc.09G330900 Theobroma cacao HOM05D002678 ORTHO05D002920 1.4e-15 86.7 96 57.3
Gorai.001G106900 Gossypium raimondii HOM05D002678 ORTHO05D002920 1.8e-15 86.3 97 47.4
TAR636G3383 Trochodendron aralioides HOM05D002678 ORTHO05D002920 1.8e-15 86.3 102 51.0
vmacro03134 Vaccinium macrocarpon HOM05D002678 ORTHO05D002920 1.8e-15 86.3 98 48.0
ClCG02G020590 Citrullus lanatus HOM05D002678 ORTHO05D002920 2.3e-15 85.9 101 61.4
Phvul.007G160800 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 2.3e-15 85.9 97 50.5
Nitab4.5_0000040g0520 Nicotiana tabacum HOM05D002678 ORTHO05D002920 5.1e-15 84.7 96 54.2
Cfa017459 Carpinus fangiana HOM05D002678 ORTHO05D002920 8.8e-15 84.0 97 48.5
Gohir.D03G131000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 8.8e-15 84.0 96 44.8
CiPaw.09G186200 Carya illinoinensis HOM05D002678 ORTHO05D002920 1.1e-14 83.6 97 46.4
Gorai.003G137800 Gossypium raimondii HOM05D002678 ORTHO05D002920 1.1e-14 83.6 96 44.8
Glyma.10G046800 Glycine max HOM05D002678 ORTHO05D002920 1.5e-14 83.2 97 48.5
Medtr1g067350 Medicago truncatula HOM05D002678 ORTHO05D002920 1.5e-14 83.2 97 50.5
Sed0001325 Sechium edule HOM05D002678 ORTHO05D002920 1.5e-14 83.2 107 48.6
DCAR_018868 Daucus carota HOM05D002678 ORTHO05D002920 2.0e-14 82.8 107 48.6
ECA248G3075 Erigeron canadensis HOM05D002678 ORTHO05D002920 2.0e-14 82.8 106 61.3
Glyma.13G134700 Glycine max HOM05D002678 ORTHO05D002920 2.0e-14 82.8 97 48.5
Nn2g10547 Nelumbo nucifera HOM05D002678 ORTHO05D002920 2.0e-14 82.8 103 49.5
Psat6g069440 Pisum sativum HOM05D002678 ORTHO05D002920 2.0e-14 82.8 101 59.4
Potri.006G215000 Populus trichocarpa HOM05D002678 ORTHO05D002920 2.0e-14 82.8 97 49.5
TPR.G10526 Trifolium pratense HOM05D002678 ORTHO05D002920 2.0e-14 82.8 97 54.6
Prupe.6G246400 Prunus persica HOM05D002678 ORTHO05D002920 3.3e-14 82.0 97 48.5
QL01p034494 Quercus lobata HOM05D002678 ORTHO05D002920 3.3e-14 82.0 97 50.5
VMungo0720G1849 Vigna mungo HOM05D002678 ORTHO05D002920 3.3e-14 82.0 102 47.1
AUR62001571 Chenopodium quinoa HOM05D002678 ORTHO05D002920 4.3e-14 81.6 96 49.0
Ciclev10012982m.g Citrus clementina HOM05D002678 ORTHO05D002920 4.3e-14 81.6 111 58.6
Dinv35670 Davidia involucrata HOM05D002678 ORTHO05D002920 4.3e-14 81.6 103 48.5
MBI14_g21098_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 4.3e-14 81.6 97 48.5
Gohir.A03G037400 Gossypium hirsutum HOM05D002678 ORTHO05D002920 5.7e-14 81.3 96 44.8
RcHm_v2.0_Chr3g0467961 Rosa chinensis HOM05D002678 ORTHO05D002920 5.7e-14 81.3 97 54.6
Aqoxy4G03090 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 7.4e-14 80.9 104 46.2
DCAR_015584 Daucus carota HOM05D002678 ORTHO05D002920 7.4e-14 80.9 97 49.5
Duzib168G1913 Durio zibethinus HOM05D002678 ORTHO05D002920 7.4e-14 80.9 96 54.2
Lsat_1_v5_gn_5_167180 Lactuca sativa HOM05D002678 ORTHO05D002920 7.4e-14 80.9 106 60.4
Nn2g12832 Nelumbo nucifera HOM05D002678 ORTHO05D002920 7.4e-14 80.9 103 48.5
TWI79G0420 Tripterygium wilfordii HOM05D002678 ORTHO05D002920 7.4e-14 80.9 98 43.9
TAR623G1692 Trochodendron aralioides HOM05D002678 ORTHO05D002920 9.7e-14 80.5 104 48.1
MD12G1132300 Malus domestica HOM05D002678 ORTHO05D002920 1.3e-13 80.1 101 46.5
TPR.G35579 Trifolium pratense HOM05D002678 ORTHO05D002920 1.3e-13 80.1 97 49.5
Eucgr.L00360 Eucalyptus grandis HOM05D002678 ORTHO05D002920 1.7e-13 79.7 96 46.9
Medtr7g100340 Medicago truncatula HOM05D002678 ORTHO05D002920 1.7e-13 79.7 97 48.5
Peaxi162Scf00411g00813 Petunia axillaris HOM05D002678 ORTHO05D002920 1.7e-13 79.7 84 69.0
COL.COLO4_18420 Corchorus olitorius HOM05D002678 ORTHO05D002920 2.2e-13 79.3 96 58.3
FvH4_6g14750 Fragaria vesca HOM05D002678 ORTHO05D002920 2.2e-13 79.3 97 57.7
FAN14G4174 Fragaria x ananassa HOM05D002678 ORTHO05D002920 2.2e-13 79.3 97 57.7
Lj5g0022817 Lotus japonicus HOM05D002678 ORTHO05D002920 2.2e-13 79.3 97 53.6
AUR62020213 Chenopodium quinoa HOM05D002678 ORTHO05D002920 2.8e-13 79.0 96 60.4
Haze_20701 Corylus avellana HOM05D002678 ORTHO05D002920 2.8e-13 79.0 96 46.9
MD04G1116500 Malus domestica HOM05D002678 ORTHO05D002920 2.8e-13 79.0 102 51.0
SalBow3G1187 Salvia bowleyana HOM05D002678 ORTHO05D002920 2.8e-13 79.0 95 49.5
SalBow3G2888 Salvia bowleyana HOM05D002678 ORTHO05D002920 2.8e-13 79.0 96 45.8
Aqoxy2G01947 Aquilegia oxysepala HOM05D002678 ORTHO05D002920 3.7e-13 78.6 96 47.9
FAN02G3512 Fragaria x ananassa HOM05D002678 ORTHO05D002920 3.7e-13 78.6 97 57.7
arahy.Tifrunner.gnm1.ann1.2B715G Arachis hypogaea HOM05D002678 ORTHO05D002920 4.8e-13 78.2 102 44.1
arahy.Tifrunner.gnm1.ann1.FZ8WY7 Arachis hypogaea HOM05D002678 ORTHO05D002920 6.3e-13 77.8 102 44.1
FAN05G1053 Fragaria x ananassa HOM05D002678 ORTHO05D002920 6.3e-13 77.8 99 56.6
Oeu035168.1 Olea europaea HOM05D002678 ORTHO05D002920 6.3e-13 77.8 95 53.7
PGSC0003DMG400011054 Solanum tuberosum HOM05D002678 ORTHO05D002920 6.3e-13 77.8 100 47.0
Rhsim05G0185100 Rhododendron simsii HOM05D002678 ORTHO05D002920 8.2e-13 77.4 97 45.4
FAN09G4043 Fragaria x ananassa HOM05D002678 ORTHO05D002920 1.1e-12 77.0 97 56.7
Manes.04G028900 Manihot esculenta HOM05D002678 ORTHO05D002920 1.8e-12 76.3 96 43.8
Cc06_g03230 Coffea canephora HOM05D002678 ORTHO05D002920 3.1e-12 75.5 95 48.4
Sabra06G0166000 Salix brachista HOM05D002678 ORTHO05D002920 4.1e-12 75.1 90 48.9
Gohir.A08G000129 Gossypium hirsutum HOM05D002678 ORTHO05D002920 5.3e-12 74.7 93 46.2
Gorai.004G003100 Gossypium raimondii HOM05D002678 ORTHO05D002920 5.3e-12 74.7 93 46.2
MBI05_g32634_MAGBIO Magnolia biondii HOM05D002678 ORTHO05D002920 5.3e-12 74.7 96 50.0
unitig_27.g25073 Utricularia gibba HOM05D002678 ORTHO05D002920 5.3e-12 74.7 96 47.9
Manes.11G136900 Manihot esculenta HOM05D002678 ORTHO05D002920 6.9e-12 74.3 110 50.0
Solyc10g084510.1 Solanum lycopersicum HOM05D002678 ORTHO05D002920 6.9e-12 74.3 100 46.0
Sopen10g033940 Solanum pennellii HOM05D002678 ORTHO05D002920 6.9e-12 74.3 100 46.0
Eucgr.K03179 Eucalyptus grandis HOM05D002678 ORTHO05D002920 9.1e-12 73.9 96 46.9
QL07p046064 Quercus lobata HOM05D002678 ORTHO05D002920 9.1e-12 73.9 93 46.2
Actinidia37266 Actinidia chinensis HOM05D002678 ORTHO05D002920 1.2e-11 73.6 93 50.5
Thecc.05G048400 Theobroma cacao HOM05D002678 ORTHO05D002920 1.2e-11 73.6 97 46.4
Ciclev10030290m.g Citrus clementina HOM05D002678 ORTHO05D002920 1.5e-11 73.2 96 53.1
EL10Ac7g16278 Beta vulgaris HOM05D002678 ORTHO05D002920 2.0e-11 72.8 96 45.8
Duzib170G1033 Durio zibethinus HOM05D002678 ORTHO05D002920 2.0e-11 72.8 96 45.8
Eucgr.A01213 Eucalyptus grandis HOM05D002678 ORTHO05D002920 2.0e-11 72.8 100 43.0
HanXRQChr14g0429171 Helianthus annuus HOM05D002678 ORTHO05D002920 2.6e-11 72.4 97 46.4
Atru.chr3.3786 Acer truncatum HOM05D002678 ORTHO05D002920 3.4e-11 72.0 101 44.6
Gohir.D08G009900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 3.4e-11 72.0 93 45.2
DCAR_017751 Daucus carota HOM05D002678 ORTHO05D002920 7.7e-11 70.9 97 45.4
PGR004G2176 Punica granatum HOM05D002678 ORTHO05D002920 7.7e-11 70.9 96 59.4
unitig_744.g24623 Utricularia gibba HOM05D002678 ORTHO05D002920 1.3e-10 70.1 98 42.9
Duzib093G0125 Durio zibethinus HOM05D002678 ORTHO05D002920 1.7e-10 69.7 96 45.8
Dinv06291 Davidia involucrata HOM05D002678 ORTHO05D002920 2.9e-10 68.9 85 62.4
PGR004G2814 Punica granatum HOM05D002678 ORTHO05D002920 5.0e-10 68.2 96 50.0
PGR102G2182 Punica granatum HOM05D002678 ORTHO05D002920 8.5e-10 67.4 93 43.0
ClCG10G020770 Citrullus lanatus HOM05D002678 ORTHO05D002920 1.1e-09 67.0 97 48.5
DCAR_014949 Daucus carota HOM05D002678 ORTHO05D002920 1.1e-09 67.0 95 37.9
SGA_v2.0_scaffold94G28644 Striga asiatica HOM05D002678 ORTHO05D002920 1.4e-09 66.6 108 50.9
COL.COLO4_07093 Corchorus olitorius HOM05D002678 ORTHO05D002920 1.9e-09 66.2 96 42.7
ATR0759G110 Amborella trichopoda HOM05D002678 ORTHO05D002920 2.5e-09 65.9 103 41.7
C03p01120 Brassica napus HOM05D002678 ORTHO05D002920 2.5e-09 65.9 101 41.6
BolC3t12671H Brassica oleracea HOM05D002678 ORTHO05D002920 2.5e-09 65.9 101 41.6
Gohir.A01G218900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.5e-09 65.9 96 41.7
Gorai.002G253000 Gossypium raimondii HOM05D002678 ORTHO05D002920 2.5e-09 65.9 96 41.7
EL10Ac7g15949 Beta vulgaris HOM05D002678 ORTHO05D002920 4.2e-09 65.1 96 41.7
A03p00870 Brassica napus HOM05D002678 ORTHO05D002920 7.2e-09 64.3 100 42.0
Migut.L01639 Erythranthe guttata HOM05D002678 ORTHO05D002920 7.2e-09 64.3 95 40.0
Gohir.D04G117300 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.2e-09 64.3 101 43.6
Gohir.D09G155600 Gossypium hirsutum HOM05D002678 ORTHO05D002920 7.2e-09 64.3 101 43.6
Gorai.006G177000 Gossypium raimondii HOM05D002678 ORTHO05D002920 7.2e-09 64.3 101 43.6
Carub.0006s0146 Capsella rubella HOM05D002678 ORTHO05D002920 9.4e-09 63.9 106 37.7
AT5G02640 Arabidopsis thaliana HOM05D002678 ORTHO05D002920 1.2e-08 63.5 105 55.2
Gohir.D01G207900 Gossypium hirsutum HOM05D002678 ORTHO05D002920 1.2e-08 63.5 96 40.6
Gorai.009G422300 Gossypium raimondii HOM05D002678 ORTHO05D002920 1.2e-08 63.5 101 42.6
MELO3C009291.2 Cucumis melo HOM05D002678 ORTHO05D002920 1.6e-08 63.2 108 50.0
PSO339G4561 Papaver somniferum HOM05D002678 ORTHO05D002920 1.6e-08 63.2 105 48.6
PSO384G0436 Papaver somniferum HOM05D002678 ORTHO05D002920 1.6e-08 63.2 105 48.6
Sed0026303 Sechium edule HOM05D002678 ORTHO05D002920 1.6e-08 63.2 95 42.1
Gohir.A09G160000 Gossypium hirsutum HOM05D002678 ORTHO05D002920 2.1e-08 62.8 95 44.2
Atru.chr8.2500 Acer truncatum HOM05D002678 ORTHO05D002920 2.7e-08 62.4 120 47.5
CANSAT80G0424 Cannabis sativa HOM05D002678 ORTHO05D002920 2.7e-08 62.4 122 36.9
Psat3g048080 Pisum sativum HOM05D002678 ORTHO05D002920 2.7e-08 62.4 97 44.3
AUR62009642 Chenopodium quinoa HOM05D002678 ORTHO05D002920 4.7e-08 61.6 100 43.0
Gohir.A04G078100 Gossypium hirsutum HOM05D002678 ORTHO05D002920 6.1e-08 61.2 95 44.2
Duzib106G2004 Durio zibethinus HOM05D002678 ORTHO05D002920 7.9e-08 60.8 103 41.7
BcaB01g06197 Brassica carinata HOM05D002678 ORTHO05D002920 1.8e-07 59.7 105 41.0
SEGI_24546 Sequoiadendron giganteum HOM05D002678 ORTHO05D002920 2.3e-07 59.3 92 42.4
Duzib128G1720 Durio zibethinus HOM05D002678 ORTHO05D002920 3.9e-07 58.5 95 42.1
Sc01g0003810 Simmondsia chinensis HOM05D002678 ORTHO05D002920 3.9e-07 58.5 138 31.2
THA.LOC104826999 Tarenaya hassleriana HOM05D002678 ORTHO05D002920 3.9e-07 58.5 108 48.1
A10p33010 Brassica napus HOM05D002678 ORTHO05D002920 5.1e-07 58.2 109 38.5
Os05g0120300 Oryza sativa ssp. japonica HOM05D002678 ORTHO05D002920 5.1e-07 58.2 127 37.0
AL6G11940 Arabidopsis lyrata HOM05D002678 ORTHO05D002920 8.8e-07 57.4 102 46.1
Glyma.13G331100 Glycine max HOM05D002678 ORTHO05D002920 8.8e-07 57.4 93 38.7
Sp6g39880 Schrenkiella parvula HOM05D002678 ORTHO05D002920 1.1e-06 57.0 107 38.3
HPP92_012460 Vanilla planifolia HOM05D002678 ORTHO05D002920 1.1e-06 57.0 109 37.6
BcaNung03282 Brassica carinata HOM05D002678 ORTHO05D002920 1.5e-06 56.6 110 37.3
C09p73980 Brassica napus HOM05D002678 ORTHO05D002920 1.5e-06 56.6 110 37.3
CiPaw.13G102100 Carya illinoinensis HOM05D002678 ORTHO05D002920 1.5e-06 56.6 123 44.7
Thhalv10014890m.g Eutrema salsugineum HOM05D002678 ORTHO05D002920 1.5e-06 56.6 107 44.9
AUR62001849 Chenopodium quinoa HOM05D002678 ORTHO05D002920 2.0e-06 56.2 100 39.0
BcaC06g32005 Brassica carinata HOM05D002678 ORTHO05D002920 2.6e-06 55.8 107 36.4
Ah.08g214950 Amaranthus hybridus HOM05D002678 ORTHO05D002920 4.4e-06 55.1 108 38.9
BraA10t45338Z Brassica rapa HOM05D002678 ORTHO05D002920 4.4e-06 55.1 111 38.7
MELO3C020681.2 Cucumis melo HOM05D002678 ORTHO05D002920 4.4e-06 55.1 101 39.6
Ah.15g096380 Amaranthus hybridus HOM05D002678 ORTHO05D002920 5.7e-06 54.7 101 39.6
BolC9t60133H Brassica oleracea HOM05D002678 ORTHO05D002920 7.4e-06 54.3 111 40.5
Zm00001eb265860 Zea mays HOM05D002678 ORTHO05D002920 7.4e-06 54.3 152 35.5
Cpa.g.sc139.1 Carica papaya HOM05D002678 ORTHO05D002920 9.7e-06 53.9 102 35.3
Lj1C177T9 Lonicera japonica HOM05D002678 ORTHO05D002920 9.7e-06 53.9 44 56.8
Phvul.L002927 Phaseolus vulgaris HOM05D002678 ORTHO05D002920 9.7e-06 53.9 95 36.8


User provided reference genes

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