Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007029g0030 Nicotiana tabacum HOM05D003033 ORTHO05D003475 5.5e-53 210.7 105 100.0
PGSC0003DMG400023170 Solanum tuberosum HOM05D003033 ORTHO05D003475 1.3e-14 83.2 189 34.9
Solyc08g014350.1 Solanum lycopersicum HOM05D003033 ORTHO05D003475 2.9e-14 82.0 189 34.9
Sopen08g005280 Solanum pennellii HOM05D003033 ORTHO05D003475 7.2e-13 77.4 70 65.7
CiPaw.01G169100 Carya illinoinensis HOM05D003033 ORTHO05D003475 8.0e-12 73.9 134 39.6
Duzib212G0081 Durio zibethinus HOM05D003033 ORTHO05D003475 1.8e-11 72.8 111 36.9
Manes.12G001400 Manihot esculenta HOM05D003033 ORTHO05D003475 1.8e-11 72.8 78 50.0
Thecc.04G163900 Theobroma cacao HOM05D003033 ORTHO05D003475 1.8e-11 72.8 64 59.4
QL10p016611 Quercus lobata HOM05D003033 ORTHO05D003475 5.2e-11 71.2 65 56.9
Cfa006222 Carpinus fangiana HOM05D003033 ORTHO05D003475 6.8e-11 70.9 64 56.2
Potri.019G113300 Populus trichocarpa HOM05D003033 ORTHO05D003475 1.2e-10 70.1 64 62.5
Thecc.05G112700 Theobroma cacao HOM05D003033 ORTHO05D003475 1.2e-10 70.1 63 58.7
GSVIVG01007183001 Vitis vinifera HOM05D003033 ORTHO05D003475 1.5e-10 69.7 65 56.9
MELO3C014080.2 Cucumis melo HOM05D003033 ORTHO05D003475 2.0e-10 69.3 78 50.0
Nitab4.5_0000971g0130 Nicotiana tabacum HOM05D003033 ORTHO05D003475 2.0e-10 69.3 61 59.0
Sp3g01670 Schrenkiella parvula HOM05D003033 ORTHO05D003475 2.0e-10 69.3 75 50.7
Gohir.D10G122200 Gossypium hirsutum HOM05D003033 ORTHO05D003475 2.6e-10 68.9 65 60.0
CiPaw.08G111800 Carya illinoinensis HOM05D003033 ORTHO05D003475 3.4e-10 68.6 65 53.8
Gohir.A10G144800 Gossypium hirsutum HOM05D003033 ORTHO05D003475 3.4e-10 68.6 65 60.0
Gorai.011G134400 Gossypium raimondii HOM05D003033 ORTHO05D003475 3.4e-10 68.6 65 60.0
Cpa.g.sc144.14 Carica papaya HOM05D003033 ORTHO05D003475 4.4e-10 68.2 64 53.1
Manes.13G000400 Manihot esculenta HOM05D003033 ORTHO05D003475 4.4e-10 68.2 78 47.4
Oeu062032.1 Olea europaea HOM05D003033 ORTHO05D003475 4.4e-10 68.2 64 56.2
Haze_04613 Corylus avellana HOM05D003033 ORTHO05D003475 5.7e-10 67.8 66 56.1
Manes.01G016800 Manihot esculenta HOM05D003033 ORTHO05D003475 7.5e-10 67.4 64 56.2
Potri.013G127900 Populus trichocarpa HOM05D003033 ORTHO05D003475 9.8e-10 67.0 40 80.0
Sabra08G0058000 Salix brachista HOM05D003033 ORTHO05D003475 9.8e-10 67.0 65 53.8
Potri.008G078000 Populus trichocarpa HOM05D003033 ORTHO05D003475 1.3e-09 66.6 65 53.8
SalBow1G4141 Salvia bowleyana HOM05D003033 ORTHO05D003475 1.3e-09 66.6 64 53.1
CDE02G2923 Ceratophyllum demersum HOM05D003033 ORTHO05D003475 1.7e-09 66.2 81 49.4
TWI75G0654 Tripterygium wilfordii HOM05D003033 ORTHO05D003475 1.7e-09 66.2 64 51.6
COL.COLO4_38122 Corchorus olitorius HOM05D003033 ORTHO05D003475 2.2e-09 65.9 112 36.6
Duzib106G0773 Durio zibethinus HOM05D003033 ORTHO05D003475 2.2e-09 65.9 64 51.6
Duzib151G0947 Durio zibethinus HOM05D003033 ORTHO05D003475 2.2e-09 65.9 60 58.3
Duzib177G0566 Durio zibethinus HOM05D003033 ORTHO05D003475 2.2e-09 65.9 66 53.0
CDE09G1187 Ceratophyllum demersum HOM05D003033 ORTHO05D003475 2.8e-09 65.5 82 47.6
Ciclev10002603m.g Citrus clementina HOM05D003033 ORTHO05D003475 2.8e-09 65.5 77 50.6
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.8e-09 65.5 64 53.1
TWI36G0840 Tripterygium wilfordii HOM05D003033 ORTHO05D003475 2.8e-09 65.5 64 51.6
ClCG10G004090 Citrullus lanatus HOM05D003033 ORTHO05D003475 3.7e-09 65.1 78 50.0
Nn7g37534 Nelumbo nucifera HOM05D003033 ORTHO05D003475 3.7e-09 65.1 111 36.9
Migut.F02089 Erythranthe guttata HOM05D003033 ORTHO05D003475 4.9e-09 64.7 64 57.8
Hma1.2p1_0620F.1_g190470 Hydrangea macrophylla HOM05D003033 ORTHO05D003475 4.9e-09 64.7 69 50.7
Peaxi162Scf00254g00068 Petunia axillaris HOM05D003033 ORTHO05D003475 4.9e-09 64.7 96 41.7
Sabra10G0137400 Salix brachista HOM05D003033 ORTHO05D003475 4.9e-09 64.7 67 53.7
Potri.010G179300 Populus trichocarpa HOM05D003033 ORTHO05D003475 6.3e-09 64.3 67 53.7
QL07p048121 Quercus lobata HOM05D003033 ORTHO05D003475 6.3e-09 64.3 67 52.2
Rhsim05G0164100 Rhododendron simsii HOM05D003033 ORTHO05D003475 6.3e-09 64.3 66 54.5
Aa31LG9G17780 Aethionema arabicum HOM05D003033 ORTHO05D003475 8.3e-09 63.9 70 45.7
THA.LOC104802430 Tarenaya hassleriana HOM05D003033 ORTHO05D003475 8.3e-09 63.9 63 54.0
Aa31LG5G13120 Aethionema arabicum HOM05D003033 ORTHO05D003475 1.1e-08 63.5 64 50.0
AT3G02640 Arabidopsis thaliana HOM05D003033 ORTHO05D003475 1.1e-08 63.5 66 51.5
TAR633G0945 Trochodendron aralioides HOM05D003033 ORTHO05D003475 1.1e-08 63.5 76 50.0
C02p50160 Brassica napus HOM05D000012 ORTHO05D000567 1.4e-08 63.2 64 51.6
BolC2t11093H Brassica oleracea HOM05D003033 ORTHO05D003475 1.4e-08 63.2 64 51.6
Thhalv10021586m.g Eutrema salsugineum HOM05D003033 ORTHO05D003475 1.4e-08 63.2 68 48.5
Nitab4.5_0009685g0030 Nicotiana tabacum HOM05D003033 ORTHO05D003475 1.4e-08 63.2 61 54.1
TWI15G1086 Tripterygium wilfordii HOM05D003033 ORTHO05D003475 1.4e-08 63.2 45 68.9
HPP92_005579 Vanilla planifolia HOM05D003033 ORTHO05D003475 1.4e-08 63.2 83 44.6
CAN.G321.1 Capsicum annuum HOM05D003033 ORTHO05D003475 1.8e-08 62.8 78 44.9
TAR362G1216 Trochodendron aralioides HOM05D003033 ORTHO05D003475 1.8e-08 62.8 76 48.7
CANSAT64G2134 Cannabis sativa HOM05D003033 ORTHO05D003475 2.4e-08 62.4 68 51.5
CARHR076640 Cardamine hirsuta HOM05D003033 ORTHO05D003475 2.4e-08 62.4 64 48.4
vmacro08166 Vaccinium macrocarpon HOM05D003033 ORTHO05D003475 2.4e-08 62.4 66 53.0
Atru.chr2.213 Acer truncatum HOM05D003033 ORTHO05D003475 3.1e-08 62.0 80 48.8
MSTRG.9240 Avicennia marina HOM05D003033 ORTHO05D003475 3.1e-08 62.0 64 53.1
BcaB08g36859 Brassica carinata HOM05D003033 ORTHO05D003475 3.1e-08 62.0 64 51.6
C03p08870 Brassica napus HOM05D003033 ORTHO05D003475 3.1e-08 62.0 63 52.4
BolC3t13382H Brassica oleracea HOM05D003033 ORTHO05D003475 3.1e-08 62.0 63 52.4
Glyma.09G247700 Glycine max HOM05D003033 ORTHO05D003475 3.1e-08 62.0 64 57.8
Lj1g0004834 Lotus japonicus HOM05D003033 ORTHO05D003475 3.1e-08 62.0 66 57.6
Phvul.008G051600 Phaseolus vulgaris HOM05D003033 ORTHO05D003475 3.1e-08 62.0 65 58.5
Aa31LG11G13370 Aethionema arabicum HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 46.9
AL3G12010 Arabidopsis lyrata HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 48.4
EL10Ac3g06106 Beta vulgaris HOM05D003033 ORTHO05D003475 4.1e-08 61.6 54 61.1
BcaC03g13989 Brassica carinata HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 50.0
BcaC04g18904 Brassica carinata HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 51.6
BolC2t07325H Brassica oleracea HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 50.0
BolC9t58915H Brassica oleracea HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 51.6
AUR62000268 Chenopodium quinoa HOM05D003033 ORTHO05D003475 4.1e-08 61.6 61 49.2
AUR62006616 Chenopodium quinoa HOM05D003033 ORTHO05D003475 4.1e-08 61.6 61 49.2
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 4.1e-08 61.6 64 54.7
Dinv17136 Davidia involucrata HOM05D003033 ORTHO05D003475 4.1e-08 61.6 58 56.9
Medtr7g080550 Medicago truncatula HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 56.2
Nn1g09555 Nelumbo nucifera HOM05D003033 ORTHO05D003475 4.1e-08 61.6 56 55.4
PGR031G3401 Punica granatum HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 50.0
Sed0011717 Sechium edule HOM05D003033 ORTHO05D003475 4.1e-08 61.6 65 53.8
Sopen11g004470 Solanum pennellii HOM05D003033 ORTHO05D003475 4.1e-08 61.6 115 33.0
unitig_46.g18572 Utricularia gibba HOM05D003033 ORTHO05D003475 4.1e-08 61.6 64 48.4
VMungo1383G0399 Vigna mungo HOM05D003033 ORTHO05D003475 4.1e-08 61.6 67 56.7
Migut.F01840 Erythranthe guttata HOM05D003033 ORTHO05D003475 5.4e-08 61.2 77 48.1
Gohir.A11G305000 Gossypium hirsutum HOM05D003033 ORTHO05D003475 5.4e-08 61.2 85 44.7
RcHm_v2.0_Chr3g0447401 Rosa chinensis HOM05D003033 ORTHO05D003475 5.4e-08 61.2 67 49.3
Sp6g27910 Schrenkiella parvula HOM05D003033 ORTHO05D003475 5.4e-08 61.2 64 50.0
A10p22810 Brassica napus HOM05D003033 ORTHO05D003475 7.0e-08 60.8 64 51.6
BraA10t44348Z Brassica rapa HOM05D003033 ORTHO05D003475 7.0e-08 60.8 64 51.6
CARHR216380 Cardamine hirsuta HOM05D003033 ORTHO05D003475 7.0e-08 60.8 119 31.1
Thhalv10027952m.g Eutrema salsugineum HOM05D003033 ORTHO05D003475 7.0e-08 60.8 81 44.4
FvH4_6g00070 Fragaria vesca HOM05D003033 ORTHO05D003475 7.0e-08 60.8 67 49.3
FAN09G0783 Fragaria x ananassa HOM05D003033 ORTHO05D003475 7.0e-08 60.8 67 49.3
Nitab4.5_0001003g0190 Nicotiana tabacum HOM05D003033 ORTHO05D003475 7.0e-08 60.8 78 44.9
BraA03t10091Z Brassica rapa HOM05D003033 ORTHO05D003475 9.2e-08 60.5 63 50.8
CSS0035331 Camellia sinensis var. sinensis HOM05D003033 ORTHO05D003475 9.2e-08 60.5 66 54.5
Gohir.D11G320400 Gossypium hirsutum HOM05D003033 ORTHO05D003475 9.2e-08 60.5 64 54.7
Gorai.007G350600 Gossypium raimondii HOM05D003033 ORTHO05D003475 9.2e-08 60.5 64 54.7
PGSC0003DMG400016176 Solanum tuberosum HOM05D003033 ORTHO05D003475 9.2e-08 60.5 115 32.2
TWI18G1187 Tripterygium wilfordii HOM05D003033 ORTHO05D003475 9.2e-08 60.5 63 50.8
AL7G45430 Arabidopsis lyrata HOM05D003033 ORTHO05D003475 1.2e-07 60.1 119 31.1
Nn1g09556 Nelumbo nucifera HOM05D003033 ORTHO05D003475 1.2e-07 60.1 64 48.4
Oeu034711.1 Olea europaea HOM05D003033 ORTHO05D003475 1.2e-07 60.1 59 55.9
THA.LOC104827167 Tarenaya hassleriana HOM05D003033 ORTHO05D003475 1.2e-07 60.1 64 51.6
A03p07630 Brassica napus HOM05D003033 ORTHO05D003475 1.6e-07 59.7 63 50.8
Carub.0003s0175 Capsella rubella HOM05D003033 ORTHO05D003475 1.6e-07 59.7 57 52.6
Thhalv10015375m.g Eutrema salsugineum HOM05D003033 ORTHO05D003475 1.6e-07 59.7 64 46.9
PSO017G0426 Papaver somniferum HOM05D003033 ORTHO05D003475 1.6e-07 59.7 69 50.7
PSO675G8294 Papaver somniferum HOM05D003033 ORTHO05D003475 1.6e-07 59.7 69 50.7
TWI63G0816 Tripterygium wilfordii HOM05D003033 ORTHO05D003475 1.6e-07 59.7 40 72.5
BcaC02g09529 Brassica carinata HOM05D003033 ORTHO05D003475 2.0e-07 59.3 81 44.4
C04p43800 Brassica napus HOM05D003033 ORTHO05D003475 2.0e-07 59.3 81 44.4
BolC4t25961H Brassica oleracea HOM05D003033 ORTHO05D003475 2.0e-07 59.3 81 44.4
FAN02G3480 Fragaria x ananassa HOM05D003033 ORTHO05D003475 2.0e-07 59.3 67 47.8
MD00G1017200 Malus domestica HOM05D003033 ORTHO05D003475 2.0e-07 59.3 64 51.6
Nitab4.5_0003928g0010 Nicotiana tabacum HOM05D003033 ORTHO05D003475 2.0e-07 59.3 78 43.6
A04p10290 Brassica napus HOM05D003033 ORTHO05D003475 2.7e-07 58.9 81 42.0
C07p17330 Brassica napus HOM05D003033 ORTHO05D003475 2.7e-07 58.9 70 42.9
CARHR197060 Cardamine hirsuta HOM05D003033 ORTHO05D003475 2.7e-07 58.9 63 49.2
MD12G1261500 Malus domestica HOM05D003033 ORTHO05D003475 2.7e-07 58.9 66 53.0
Prupe.6G365300 Prunus persica HOM05D003033 ORTHO05D003475 2.7e-07 58.9 64 51.6
Sp7g05680 Schrenkiella parvula HOM05D003033 ORTHO05D003475 2.7e-07 58.9 82 42.7
Sopen05g034100 Solanum pennellii HOM05D003033 ORTHO05D003475 2.7e-07 58.9 76 42.1
AT5G36710 Arabidopsis thaliana HOM05D003033 ORTHO05D003475 3.5e-07 58.5 119 31.1
AT5G36800 Arabidopsis thaliana HOM05D003033 ORTHO05D003475 3.5e-07 58.5 119 31.1
BcaC06g35329 Brassica carinata HOM05D003033 ORTHO05D003475 3.5e-07 58.5 70 42.9
BolC7t42237H Brassica oleracea HOM05D003033 ORTHO05D003475 3.5e-07 58.5 70 42.9
Carub.0006s1444 Capsella rubella HOM05D003033 ORTHO05D003475 3.5e-07 58.5 65 50.8
Psat3g101840 Pisum sativum HOM05D003033 ORTHO05D003475 3.5e-07 58.5 64 54.7
Actinidia40009 Actinidia chinensis HOM05D003033 ORTHO05D003475 4.5e-07 58.2 49 59.2
BraA04t16700Z Brassica rapa HOM05D003033 ORTHO05D003475 4.5e-07 58.2 81 39.5
Glyma.18G245100 Glycine max HOM05D003033 ORTHO05D003475 4.5e-07 58.2 64 56.2
Gohir.A09G213612 Gossypium hirsutum HOM05D003033 ORTHO05D003475 4.5e-07 58.2 63 49.2
Gohir.D09G212500 Gossypium hirsutum HOM05D003033 ORTHO05D003475 4.5e-07 58.2 63 49.2
Lsat_1_v5_gn_1_74141 Lactuca sativa HOM05D003033 ORTHO05D003475 4.5e-07 58.2 60 51.7
Lsat_1_v5_gn_1_74360 Lactuca sativa HOM05D003033 ORTHO05D003475 4.5e-07 58.2 60 51.7
THA.LOC104822001 Tarenaya hassleriana HOM05D003033 ORTHO05D003475 4.5e-07 58.2 73 45.2
AT5G16250 Arabidopsis thaliana HOM05D003033 ORTHO05D003475 5.9e-07 57.8 65 49.2
BcaB06g27037 Brassica carinata HOM05D003033 ORTHO05D003475 5.9e-07 57.8 81 39.5
DCAR_002086 Daucus carota HOM05D003033 ORTHO05D003475 5.9e-07 57.8 58 51.7
Gohir.A02G007600 Gossypium hirsutum HOM05D003033 ORTHO05D003475 5.9e-07 57.8 54 57.4
Gohir.D02G007400 Gossypium hirsutum HOM05D003033 ORTHO05D003475 5.9e-07 57.8 54 57.4
Gorai.005G008800 Gossypium raimondii HOM05D003033 ORTHO05D003475 5.9e-07 57.8 54 57.4
Lj6P206T6 Lonicera japonica HOM05D003033 ORTHO05D003475 5.9e-07 57.8 51 64.7
Lj6P218T10 Lonicera japonica HOM05D003033 ORTHO05D003475 5.9e-07 57.8 51 64.7
Oeu001221.1 Olea europaea HOM05D003033 ORTHO05D003475 7.7e-07 57.4 64 51.6
Ah.07g202870 Amaranthus hybridus HOM05D003033 ORTHO05D003475 1.0e-06 57.0 40 65.0
Gorai.006G232300 Gossypium raimondii HOM05D003033 ORTHO05D003475 1.0e-06 57.0 63 47.6
AL6G27140 Arabidopsis lyrata HOM05D003033 ORTHO05D003475 1.3e-06 56.6 65 47.7
C06p35190 Brassica napus HOM05D003033 ORTHO05D003475 1.3e-06 56.6 58 53.4
CAN.G694.29 Capsicum annuum HOM05D003033 ORTHO05D003475 1.7e-06 56.2 40 65.0
COL.COLO4_22921 Corchorus olitorius HOM05D003033 ORTHO05D003475 1.7e-06 56.2 69 47.8
BcaB01g04996 Brassica carinata HOM05D003033 ORTHO05D003475 2.3e-06 55.8 68 50.0
Carub.0007s3205 Capsella rubella HOM05D003033 ORTHO05D003475 2.3e-06 55.8 80 38.8
PGSC0003DMG400023364 Solanum tuberosum HOM05D003033 ORTHO05D003475 2.3e-06 55.8 52 53.8
Atru.chr4.3018 Acer truncatum HOM05D003033 ORTHO05D003475 2.9e-06 55.5 112 34.8
arahy.Tifrunner.gnm1.ann1.DC3F9H Arachis hypogaea HOM05D003033 ORTHO05D003475 2.9e-06 55.5 108 36.1
arahy.Tifrunner.gnm1.ann1.MS52HJ Arachis hypogaea HOM05D003033 ORTHO05D003475 2.9e-06 55.5 108 36.1
Cc09_g04130 Coffea canephora HOM05D003033 ORTHO05D003475 2.9e-06 55.5 66 45.5
TPR.G22750 Trifolium pratense HOM05D003033 ORTHO05D003475 2.9e-06 55.5 64 53.1
unitig_37.g12275 Utricularia gibba HOM05D003033 ORTHO05D003475 2.9e-06 55.5 65 46.2
unitig_46.g18571 Utricularia gibba HOM05D003033 ORTHO05D003475 2.9e-06 55.5 46 56.5
AUR62023780 Chenopodium quinoa HOM05D003033 ORTHO05D003475 3.8e-06 55.1 41 61.0
ClCG11G010020 Citrullus lanatus HOM05D003033 ORTHO05D003475 3.8e-06 55.1 59 52.5
Cc03_g14440 Coffea canephora HOM05D003033 ORTHO05D003475 3.8e-06 55.1 39 69.2
MELO3C008682.2 Cucumis melo HOM05D003033 ORTHO05D003475 3.8e-06 55.1 59 54.2
CsaV3_2G010270 Cucumis sativus L. HOM05D003033 ORTHO05D003475 3.8e-06 55.1 59 54.2
MBI10_g13923_MAGBIO Magnolia biondii HOM05D003033 ORTHO05D003475 3.8e-06 55.1 41 63.4
Sc09g0001330 Simmondsia chinensis HOM05D003033 ORTHO05D003475 3.8e-06 55.1 78 42.3
unitig_37.g12274 Utricularia gibba HOM05D003033 ORTHO05D003475 3.8e-06 55.1 55 47.3
CSS0003848 Camellia sinensis var. sinensis HOM05D003033 ORTHO05D003475 8.6e-06 53.9 64 42.2


User provided reference genes

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