Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 2.0e-138 495.7 246 100.0
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 8.0e-87 324.3 243 71.2
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 1.2e-79 300.4 238 68.9
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 1.6e-79 300.1 205 76.1
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 7.5e-77 291.2 208 74.0
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 1.2e-74 283.9 251 61.0
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.0e-74 283.1 242 61.2
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 3.8e-73 278.9 242 60.7
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 7.2e-72 274.6 246 59.3
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 1.2e-71 273.9 255 58.4
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 4.7e-71 271.9 242 60.3
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 1.0e-70 270.8 241 58.5
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 1.0e-70 270.8 239 59.0
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 3.0e-70 269.2 261 56.3
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 4.0e-70 268.9 239 60.7
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 5.2e-70 268.5 256 59.4
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 2.6e-69 266.2 242 57.9
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 7.5e-69 264.6 241 58.5
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 9.8e-69 264.2 241 58.9
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 9.8e-69 264.2 244 56.6
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.3e-68 263.8 241 59.3
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 1.3e-68 263.8 242 57.0
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 2.2e-68 263.1 244 57.8
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 3.7e-68 262.3 241 58.9
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 6.3e-68 261.5 241 58.5
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 8.3e-68 261.2 241 58.5
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 8.3e-68 261.2 239 59.4
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 1.8e-67 260.0 239 55.6
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 5.4e-67 258.5 241 58.5
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 5.4e-67 258.5 243 56.8
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 9.2e-67 257.7 241 56.4
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 1.2e-66 257.3 243 59.3
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 4.5e-66 255.4 243 54.3
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 5.9e-66 255.0 260 51.5
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 7.7e-66 254.6 241 56.8
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 2.9e-65 252.7 238 56.7
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 6.6e-65 251.5 270 51.9
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 8.6e-65 251.1 268 53.0
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 1.5e-64 250.4 241 56.4
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 1.9e-64 250.0 241 56.4
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 3.3e-64 249.2 243 54.3
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 4.3e-64 248.8 241 55.6
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 1.2e-63 247.3 242 57.0
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 2.1e-63 246.5 243 54.3
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 2.8e-63 246.1 243 53.5
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 6.1e-63 245.0 243 53.1
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 8.0e-63 244.6 238 54.2
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 1.0e-62 244.2 236 53.8
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 1.4e-62 243.8 240 55.0
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 1.4e-62 243.8 238 55.5
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 4.0e-62 242.3 154 79.9
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 1.5e-61 240.4 242 55.0
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 2.6e-61 239.6 225 56.9
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 4.4e-61 238.8 240 53.3
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 5.7e-61 238.4 243 52.7
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 1.2e-58 230.7 253 51.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 2.7e-58 229.6 241 52.7
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 1.0e-57 227.6 241 52.7
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 5.0e-57 225.3 243 51.9
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 8.6e-57 224.6 371 40.2
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 4.7e-55 218.8 242 50.0
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 1.8e-54 216.9 272 47.4
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 1.5e-53 213.8 294 42.5
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 1.4e-51 207.2 205 53.7
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 2.4e-51 206.5 145 69.7
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 3.5e-50 202.6 171 64.3
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 4.6e-50 202.2 233 49.4
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 1.7e-49 200.3 147 66.0
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 6.6e-49 198.4 145 70.3
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 6.6e-49 198.4 238 51.3
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 8.6e-49 198.0 137 70.8
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 1.1e-48 197.6 145 69.7
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.5e-48 197.2 248 48.8
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.9e-48 196.8 146 68.5
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 3.6e-47 192.6 144 67.4
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 3.1e-46 189.5 144 66.7
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 5.2e-46 188.7 246 44.7
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 2.0e-45 186.8 145 67.6
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 1.3e-44 184.1 145 65.5
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 2.9e-44 183.0 143 65.0
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 3.2e-43 179.5 243 46.1
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 9.2e-43 177.9 180 53.9
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.2e-42 177.6 243 44.0
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 7.8e-42 174.9 145 62.1
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 9.5e-40 167.9 127 70.1
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 3.6e-39 166.0 245 40.8
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 8.4e-36 154.8 244 39.3
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.7e-34 149.8 94 73.4
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 3.0e-33 146.4 123 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 1.1e-32 144.4 147 49.7
vmacro04047 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 1.5e-32 144.1 154 53.2
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 9.6e-32 141.4 228 40.8
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 8.1e-31 138.3 127 63.0
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 1.8e-30 137.1 292 38.0
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 1.8e-30 137.1 179 44.1
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.4e-30 136.7 198 42.9
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 7.6e-29 131.7 87 73.6
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 1.7e-28 130.6 91 67.0
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 2.2e-28 130.2 122 57.4
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 1.1e-27 127.9 86 67.4
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 3.5e-26 122.9 94 59.6
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 1.0e-25 121.3 86 66.3
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 2.3e-25 120.2 91 62.6
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 5.6e-24 115.5 111 58.6
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 2.8e-23 113.2 90 60.0
Peaxi162Scf00080g00812 Petunia axillaris HOM05D002956 ORTHO05D008031 4.9e-20 102.4 133 47.4
Carub.0004s0726 Capsella rubella HOM05D002956 ORTHO05D008031 3.5e-18 96.3 71 63.4
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 3.0e-17 93.2 120 45.8
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 3.0e-17 93.2 120 45.8
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 3.9e-17 92.8 369 23.6
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 6.7e-17 92.0 116 46.6
CsaV3_6G038830 Cucumis sativus L. HOM05D002956 ORTHO05D008031 3.3e-16 89.7 74 55.4
GSVIVG01037340001 Vitis vinifera HOM05D002956 ORTHO05D008031 4.3e-16 89.4 71 62.0
FAN21G3062 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.3e-15 87.8 63 69.8
SMO270G0089 Selaginella moellendorffii HOM05D055329 ORTHO05D008031 2.0e-13 80.5 141 37.6
vmacro04048 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 7.6e-13 78.6 63 66.7
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 4.9e-12 75.9 145 32.4
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 1.4e-11 74.3 145 33.1
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 1.9e-11 73.9 135 34.1
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 3.2e-11 73.2 152 30.9
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 1.2e-10 71.2 145 31.0
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 3.5e-10 69.7 145 30.3
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 4.6e-10 69.3 147 30.6
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 7.9e-10 68.6 117 31.6
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 1.8e-09 67.4 143 26.6
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 2.3e-09 67.0 116 33.6
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 2.3e-09 67.0 140 32.9
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 3.0e-09 66.6 116 33.6
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 3.0e-09 66.6 120 33.3
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 3.9e-09 66.2 145 29.7
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 6.7e-09 65.5 165 25.5
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 6.7e-09 65.5 189 26.5
MELO3C020642.2 Cucumis melo HOM05D002956 ORTHO05D008031 6.7e-09 65.5 55 58.2
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 8.7e-09 65.1 117 31.6
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 1.1e-08 64.7 149 31.5
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 1.1e-08 64.7 120 34.2
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 1.9e-08 63.9 157 26.8
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 2.5e-08 63.5 111 35.1
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 2.5e-08 63.5 143 26.6
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 2.5e-08 63.5 186 22.0
CAN.G1312.6 Capsicum annuum HOM05D001920 ORTHO05D004895 3.3e-08 63.2 116 32.8
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 3.3e-08 63.2 206 24.3
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 3.3e-08 63.2 141 29.8
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 3.3e-08 63.2 111 32.4
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 3.3e-08 63.2 116 31.0
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 3.3e-08 63.2 148 28.4
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 4.3e-08 62.8 116 33.6
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 4.3e-08 62.8 116 33.6
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 5.6e-08 62.4 108 31.5
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 1.3e-07 61.2 120 32.5
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 1.6e-07 60.8 108 33.3
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 1.6e-07 60.8 111 31.5
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 2.1e-07 60.5 111 31.5
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 2.1e-07 60.5 116 32.8
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 2.1e-07 60.5 111 32.4
AUR62009117 Chenopodium quinoa HOM05D001920 ORTHO05D004895 3.7e-07 59.7 156 26.3
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 3.7e-07 59.7 111 30.6
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 4.8e-07 59.3 113 31.9
GSVIVG01012573001 Vitis vinifera HOM05D001920 ORTHO05D004895 4.8e-07 59.3 108 30.6
Aqoxy7G04000 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 6.2e-07 58.9 111 26.1
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 6.2e-07 58.9 108 32.4
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 8.1e-07 58.5 108 30.6
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 8.1e-07 58.5 113 29.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.1e-07 58.5 113 29.2
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 8.1e-07 58.5 113 29.2
CiPaw.15G036700 Carya illinoinensis HOM05D001920 ORTHO05D004895 1.1e-06 58.2 108 29.6
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.1e-06 58.2 113 29.2
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 1.1e-06 58.2 108 29.6
Psat0s4720g0080 Pisum sativum HOM05D002956 ORTHO05D008031 1.4e-06 57.8 87 39.1
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.4e-06 57.8 189 25.4
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 1.8e-06 57.4 108 29.6
Carub.0001s3487 Capsella rubella HOM05D001920 ORTHO05D004895 1.8e-06 57.4 111 31.5
AUR62039141 Chenopodium quinoa HOM05D001920 ORTHO05D004895 1.8e-06 57.4 159 24.5
Dinv12436 Davidia involucrata HOM05D001920 ORTHO05D004895 1.8e-06 57.4 112 32.1
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 2.4e-06 57.0 108 27.8
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 2.4e-06 57.0 139 28.8
MBI11_g07545_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 3.1e-06 56.6 111 28.8
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 3.1e-06 56.6 108 30.6
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 4.0e-06 56.2 108 29.6
GSVIVG01012560001 Vitis vinifera HOM05D001920 ORTHO05D004895 4.0e-06 56.2 108 29.6
Manes.16G082500 Manihot esculenta HOM05D001920 ORTHO05D004895 5.3e-06 55.8 113 30.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 6.9e-06 55.5 88 34.1
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 9.0e-06 55.1 108 29.6


User provided reference genes

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