Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.6e-201 707.2 889 100.0
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.5e-122 444.1 874 80.5
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 6.2e-89 333.2 371 62.3
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 3.1e-80 304.3 371 74.9
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 6.9e-80 303.1 371 74.1
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 2.3e-67 261.5 371 67.9
Solyc07g045410.2 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.3e-59 235.7 316 75.9
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 1.4e-24 119.4 98 54.1
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 3.1e-24 118.2 98 57.1
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 3.1e-24 118.2 98 57.1
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 7.0e-24 117.1 97 55.7
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 7.0e-24 117.1 97 55.7
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.0e-22 113.2 98 54.1
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 2.2e-22 112.1 99 54.5
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.9e-21 109.0 99 51.5
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 2.3e-19 102.1 98 48.0
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 2.8e-17 95.1 98 45.9
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 2.8e-17 95.1 93 49.5
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.7e-17 94.7 90 48.9
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.7e-17 94.7 95 48.4
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 4.8e-17 94.4 93 50.5
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 6.3e-17 94.0 98 43.9
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 8.3e-17 93.6 98 44.9
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 8.3e-17 93.6 98 44.9
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.1e-16 91.7 98 42.9
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 9.1e-16 90.1 93 46.2
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 9.1e-16 90.1 92 45.7
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 1.2e-15 89.7 93 47.3
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.2e-15 89.7 93 48.4
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.2e-15 89.7 93 45.2
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 2.0e-15 89.0 97 47.4
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 3.5e-15 88.2 98 45.9
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 3.5e-15 88.2 98 45.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 5.9e-15 87.4 98 39.8
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 5.9e-15 87.4 93 46.2
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 7.7e-15 87.0 98 42.9
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 1.0e-14 86.7 93 50.5
CAN.G805.3 Capsicum annuum HOM05D048663 ORTHO05D006600 1.0e-14 86.7 72 68.1
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 1.3e-14 86.3 95 43.2
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.7e-14 85.9 93 43.0
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 2.9e-14 85.1 95 50.5
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.9e-14 85.1 98 37.8
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 2.9e-14 85.1 97 42.3
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.8e-14 84.7 98 39.8
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 3.8e-14 84.7 98 39.8
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 5.0e-14 84.3 93 49.5
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 8.5e-14 83.6 98 39.8
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.5e-13 82.8 86 43.0
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 1.9e-13 82.4 98 41.8
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 1.9e-13 82.4 93 43.0
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 2.5e-13 82.0 98 40.8
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 3.2e-13 81.6 98 40.8
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 4.2e-13 81.3 85 45.9
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 9.5e-13 80.1 98 39.8
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 9.5e-13 80.1 98 40.8
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 9.5e-13 80.1 86 47.7
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 1.2e-12 79.7 86 40.7
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.2e-12 79.7 93 43.0
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.2e-12 79.7 81 45.7
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 1.6e-12 79.3 93 45.2
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 1.6e-12 79.3 98 41.8
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.1e-12 79.0 101 40.6
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 2.7e-12 78.6 95 37.9
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 3.6e-12 78.2 90 40.0
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 4.7e-12 77.8 79 48.1
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 8.0e-12 77.0 86 47.7
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 1.0e-11 76.6 93 38.7
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.8e-11 75.9 93 47.3
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.8e-11 75.9 97 41.2
CAN.G177.14 Capsicum annuum HOM05D048663 ORTHO05D006600 3.0e-11 75.1 252 40.9
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 3.0e-11 75.1 94 37.2
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.0e-11 75.1 84 44.0
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 4.0e-11 74.7 89 39.3
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 5.2e-11 74.3 86 41.9
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 8.8e-11 73.6 86 40.7
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 8.8e-11 73.6 84 42.9
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 8.8e-11 73.6 84 42.9
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 1.2e-10 73.2 86 40.7
ECA240G4054 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.5e-10 72.8 98 38.8
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 1.5e-10 72.8 92 40.2
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 2.6e-10 72.0 86 40.7
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 4.4e-10 71.2 86 41.9
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 5.7e-10 70.9 84 39.3
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 5.7e-10 70.9 84 44.0
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 9.8e-10 70.1 90 40.0
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 9.8e-10 70.1 86 40.7
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 1.7e-09 69.3 86 40.7
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 6.3e-09 67.4 93 34.4
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 1.1e-08 66.6 84 46.4
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 1.1e-08 66.6 84 46.4
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 1.8e-08 65.9 92 40.2
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 2.4e-08 65.5 74 39.2
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 2.4e-08 65.5 82 36.6
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 3.1e-08 65.1 81 37.0
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 4.1e-08 64.7 84 38.1
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.4e-08 64.3 68 45.6
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 5.4e-08 64.3 68 45.6
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 5.4e-08 64.3 78 37.2
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 7.0e-08 63.9 73 42.5
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.6e-07 62.8 70 42.9
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 3.5e-07 61.6 72 41.7
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 3.5e-07 61.6 76 44.7
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 3.5e-07 61.6 76 44.7
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 7.7e-07 60.5 67 41.8
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.3e-06 59.7 76 36.8
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.3e-06 58.9 68 45.6
Atru.chr6.215 Acer truncatum HOM05D001465 ORTHO05D006600 3.8e-06 58.2 86 37.2
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 3.8e-06 58.2 180 21.1
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.8e-06 58.2 36 75.0
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 6.6e-06 57.4 85 31.8
HPP92_025444 Vanilla planifolia HOM05D005764 ORTHO05D006600 6.6e-06 57.4 78 35.9


User provided reference genes

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