Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.0e-267 924.1 436 100.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.3e-246 855.1 436 91.7
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.3e-243 844.0 436 90.1
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 1.2e-242 842.8 436 89.9
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 3.8e-241 837.8 436 89.7
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-234 814.3 438 87.2
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.9e-234 813.9 438 86.3
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 4.2e-224 781.2 444 81.5
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.0e-221 772.3 444 80.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 3.7e-220 768.1 443 81.5
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 6.3e-220 767.3 440 80.5
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 1.8e-219 765.8 436 81.0
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.8e-219 765.8 436 85.3
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.0e-217 760.0 436 80.0
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.9e-217 758.4 440 79.5
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 3.2e-216 755.0 443 79.0
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 5.2e-214 747.7 518 70.1
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 1.7e-212 742.7 438 78.3
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 4.1e-211 738.0 445 78.2
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.0e-209 733.4 442 80.3
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 6.5e-209 730.7 439 78.1
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 6.5e-209 730.7 436 78.7
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.5e-208 729.6 421 80.8
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 6.1e-207 724.2 436 77.3
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 3.0e-206 721.8 443 77.2
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 4.0e-206 721.5 436 76.8
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 8.8e-206 720.3 440 75.7
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.6e-205 718.8 446 76.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 1.3e-204 716.5 444 75.5
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 2.4e-203 712.2 440 76.4
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.1e-203 711.8 440 75.5
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 4.1e-203 711.4 436 75.7
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 7.0e-203 710.7 435 76.3
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.2e-202 709.9 447 75.4
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.6e-202 709.5 440 75.2
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 2.7e-202 708.8 445 76.4
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 1.0e-201 706.8 442 74.7
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.3e-201 706.4 439 74.9
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.7e-201 706.1 443 75.4
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 2.3e-201 705.7 441 75.1
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.9e-201 705.3 444 75.0
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.9e-201 705.3 446 74.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.9e-200 702.6 444 74.1
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.9e-200 702.6 440 75.5
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.3e-200 701.8 440 74.1
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 3.3e-200 701.8 449 75.1
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.3e-200 701.8 444 73.9
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 4.2e-200 701.4 449 74.4
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.8e-199 698.7 443 75.2
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.8e-199 698.7 444 75.7
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 6.1e-199 697.6 438 74.4
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.4e-198 696.4 444 73.9
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.8e-198 696.0 447 73.4
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 1.8e-198 696.0 444 75.0
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 4.0e-198 694.9 456 73.0
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.0e-198 694.9 450 74.9
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 8.9e-198 693.7 440 73.2
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 1.2e-197 693.3 445 74.8
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.0e-197 692.6 441 74.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.4e-197 691.8 443 74.7
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 3.4e-197 691.8 401 78.8
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 4.4e-197 691.4 444 73.4
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 9.8e-197 690.3 444 73.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.3e-196 689.9 444 73.2
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.3e-196 689.9 440 73.6
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.7e-196 689.5 445 73.7
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.2e-196 689.1 450 73.6
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 2.8e-196 688.7 444 73.4
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 3.7e-196 688.3 445 72.6
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 4.9e-196 688.0 445 73.5
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 6.3e-196 687.6 444 73.0
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 1.4e-195 686.4 445 73.3
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 1.4e-195 686.4 445 72.8
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 1.8e-195 686.0 446 72.9
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.4e-195 685.6 447 73.4
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 2.4e-195 685.6 456 72.1
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.1e-195 685.3 453 72.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 3.1e-195 685.3 458 72.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 4.1e-195 684.9 444 72.5
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 5.4e-195 684.5 444 72.5
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 1.2e-194 683.3 444 73.4
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.6e-194 682.9 446 73.5
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.0e-194 682.6 440 73.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.0e-194 682.6 470 70.4
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.5e-194 681.8 458 71.4
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 4.5e-194 681.4 458 71.6
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 5.9e-194 681.0 443 72.9
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 5.9e-194 681.0 451 71.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 5.9e-194 681.0 445 72.8
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.0e-193 680.2 459 72.3
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.0e-193 680.2 415 75.9
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.7e-193 679.5 453 72.2
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 2.3e-193 679.1 453 71.7
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 5.0e-193 677.9 445 73.0
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 6.6e-193 677.6 445 73.0
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 8.6e-193 677.2 445 73.0
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.1e-192 676.8 447 73.4
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 2.5e-192 675.6 445 73.0
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 4.3e-192 674.9 442 71.3
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 5.6e-192 674.5 444 73.4
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 9.5e-192 673.7 459 71.7
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.2e-191 673.3 458 71.2
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-191 673.3 459 70.8
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.2e-191 673.3 450 72.2
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 4.7e-191 671.4 438 71.9
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-190 669.8 459 70.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.4e-190 669.8 439 72.4
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.8e-190 669.5 437 69.6
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.5e-189 666.4 433 73.2
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.9e-188 661.4 440 70.0
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.1e-187 660.2 375 80.3
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 1.9e-187 659.4 442 71.3
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.4e-187 659.1 375 80.3
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.5e-181 637.5 394 74.9
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 6.0e-178 627.9 450 67.8
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 7.8e-178 627.5 433 69.5
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.1e-175 619.4 463 65.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 8.3e-172 607.4 319 85.6
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 7.8e-170 600.9 354 79.1
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 2.3e-169 599.4 318 84.9
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.1e-160 570.5 418 66.5
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.5e-160 569.3 348 77.9
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 6.9e-158 561.2 394 66.8
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 4.9e-156 555.1 286 86.4
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.7e-154 549.3 286 85.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.7e-154 549.3 286 86.4
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.3e-153 547.0 398 66.8
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 2.8e-143 512.7 283 79.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.5e-141 506.9 263 86.7
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.4e-141 505.8 345 65.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.1e-129 465.3 306 72.2
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 4.8e-127 458.8 312 70.5
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 2.4e-118 429.9 283 66.4
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.5e-117 427.2 384 51.0
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.7e-117 424.9 325 64.9
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.0e-106 388.3 351 50.1
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 4.0e-97 359.4 328 51.5
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.8e-92 342.8 281 63.0
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.1e-86 321.6 343 46.1
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 1.2e-66 258.1 134 85.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.6e-66 256.5 178 66.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 5.2e-57 226.1 116 89.7
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.2e-53 214.9 109 85.3
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 5.1e-52 209.5 115 80.9
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 5.2e-49 199.5 127 74.0
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 8.9e-49 198.7 134 68.7
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.1e-33 147.1 85 77.6
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.0e-33 145.6 85 76.5
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 5.1e-28 129.8 80 70.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 6.7e-28 129.4 101 62.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 2.1e-21 107.8 109 48.6
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 5.0e-15 86.7 52 76.9
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.0e-07 60.1 127 35.4


User provided reference genes

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