Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006973g0020 Nicotiana tabacum HOM05D007603 ORTHO05D009604 8.6e-80 300.4 171 100.0
Nitab4.5_0002629g0010 Nicotiana tabacum HOM05D007603 ORTHO05D009604 6.8e-69 264.2 169 90.5
Solyc07g150145.1 Solanum lycopersicum HOM05D007603 ORTHO05D009604 3.3e-55 218.8 183 73.2
PGSC0003DMG400009384 Solanum tuberosum HOM05D007603 ORTHO05D009604 9.5e-55 217.2 179 77.7
Sopen07g027470 Solanum pennellii HOM05D007603 ORTHO05D009604 5.1e-48 194.9 128 82.0
CAN.G1543.2 Capsicum annuum HOM05D007603 ORTHO05D009604 4.0e-37 158.7 179 60.9
Dinv06842 Davidia involucrata HOM05D007603 ORTHO05D009604 2.6e-28 129.4 177 63.3
Oeu036085.1 Olea europaea HOM05D007603 ORTHO05D009604 1.3e-27 127.1 187 51.9
Dinv39835 Davidia involucrata HOM05D007603 ORTHO05D009604 1.7e-27 126.7 139 63.3
Oeu016901.1 Olea europaea HOM05D007603 ORTHO05D009604 2.2e-27 126.3 182 52.7
CSS0037684 Camellia sinensis var. sinensis HOM05D007603 ORTHO05D009604 7.9e-25 117.9 184 52.7
Hma1.2p1_0002F.1_g002370 Hydrangea macrophylla HOM05D007603 ORTHO05D009604 7.9e-25 117.9 178 55.1
ClCG02G002280 Citrullus lanatus HOM05D007603 ORTHO05D009604 9.6e-23 110.9 179 51.4
MELO3C018861.2 Cucumis melo HOM05D007603 ORTHO05D009604 1.6e-22 110.2 180 49.4
vmacro12353 Vaccinium macrocarpon HOM05D007603 ORTHO05D009604 8.1e-22 107.8 176 56.8
MSTRG.14321 Avicennia marina HOM05D007603 ORTHO05D009604 2.4e-21 106.3 182 51.1
SalBow7G0820 Salvia bowleyana HOM05D007603 ORTHO05D009604 2.4e-21 106.3 177 50.8
arahy.Tifrunner.gnm1.ann1.76DKB4 Arachis hypogaea HOM05D007603 ORTHO05D009604 1.5e-20 103.6 178 48.3
Potri.013G120700 Populus trichocarpa HOM05D007603 ORTHO05D009604 2.0e-20 103.2 181 48.6
Actinidia10989 Actinidia chinensis HOM05D007603 ORTHO05D009604 3.4e-20 102.4 164 51.8
arahy.Tifrunner.gnm1.ann1.M59RYT Arachis hypogaea HOM05D007603 ORTHO05D009604 4.5e-20 102.1 178 47.8
Sabra13G0102000 Salix brachista HOM05D007603 ORTHO05D009604 6.5e-19 98.2 179 46.9
Thecc.02G187900 Theobroma cacao HOM05D007603 ORTHO05D009604 1.4e-18 97.1 181 45.9
Ciclev10017455m.g Citrus clementina HOM05D007603 ORTHO05D009604 3.2e-18 95.9 185 49.7
Sed0002279 Sechium edule HOM05D007603 ORTHO05D009604 7.1e-18 94.7 177 49.2
Potri.013G072200 Populus trichocarpa HOM05D007603 ORTHO05D009604 2.7e-17 92.8 181 45.9
Atru.chr6.2855 Acer truncatum HOM05D007603 ORTHO05D009604 4.6e-17 92.0 177 44.6
Manes.13G141000 Manihot esculenta HOM05D007603 ORTHO05D009604 6.0e-17 91.7 185 45.9
CiPaw.03G182900 Carya illinoinensis HOM05D007603 ORTHO05D009604 1.0e-16 90.9 175 44.6
Nn1g04268 Nelumbo nucifera HOM05D007603 ORTHO05D009604 1.3e-16 90.5 147 49.0
Sed0026242 Sechium edule HOM05D007603 ORTHO05D009604 1.3e-16 90.5 179 46.4
QL08p040785 Quercus lobata HOM05D007603 ORTHO05D009604 3.0e-16 89.4 148 45.9
Sabra13G0062200 Salix brachista HOM05D007603 ORTHO05D009604 5.1e-16 88.6 193 42.0
THA.LOC104825256 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 6.7e-16 88.2 181 45.3
Cc05_g07840 Coffea canephora HOM05D007603 ORTHO05D009604 8.7e-16 87.8 132 49.2
Haze_13265 Corylus avellana HOM05D007603 ORTHO05D009604 1.6e-14 83.6 185 49.2
TWI23G0636 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 1.6e-14 83.6 176 48.9
Lsat_1_v5_gn_8_137160 Lactuca sativa HOM05D007603 ORTHO05D009604 2.1e-14 83.2 180 45.6
Aqoxy1G02256 Aquilegia oxysepala HOM05D007603 ORTHO05D009604 3.7e-14 82.4 208 39.9
AUR62036075 Chenopodium quinoa HOM05D007603 ORTHO05D009604 3.7e-14 82.4 133 45.1
Psat5g274200 Pisum sativum HOM05D007603 ORTHO05D009604 3.7e-14 82.4 165 44.2
Aa31sc35G40 Aethionema arabicum HOM05D007603 ORTHO05D009604 4.8e-14 82.0 190 41.6
Actinidia11119 Actinidia chinensis HOM05D007603 ORTHO05D009604 1.1e-13 80.9 130 49.2
VMungo1080G0021 Vigna mungo HOM05D007603 ORTHO05D009604 2.4e-13 79.7 172 45.9
Glyma.12G207700 Glycine max HOM05D007603 ORTHO05D009604 3.1e-13 79.3 175 45.1
PGR042G1843 Punica granatum HOM05D007603 ORTHO05D009604 6.9e-13 78.2 179 47.5
AUR62043430 Chenopodium quinoa HOM05D007603 ORTHO05D009604 9.0e-13 77.8 138 44.2
DCAR_013048 Daucus carota HOM05D007603 ORTHO05D009604 9.0e-13 77.8 180 42.8
Prupe.3G128600 Prunus persica HOM05D007603 ORTHO05D009604 9.0e-13 77.8 183 42.1
Gohir.D02G176900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 1.2e-12 77.4 173 43.4
Hund07856 Selenicereus undatus HOM05D007603 ORTHO05D009604 1.5e-12 77.0 105 48.6
Lalb_Chr14g0367241 Lupinus albus HOM05D007603 ORTHO05D009604 2.0e-12 76.6 174 39.7
Cpa.g.sc50.10 Carica papaya HOM05D007603 ORTHO05D009604 2.6e-12 76.3 198 41.4
TAR626G1090 Trochodendron aralioides HOM05D001501 ORTHO05D001329 2.6e-12 76.3 112 53.6
Gohir.A03G153900 Gossypium hirsutum HOM05D007603 ORTHO05D009604 3.4e-12 75.9 173 43.4
BcaB02g07727 Brassica carinata HOM05D007603 ORTHO05D009604 5.8e-12 75.1 181 38.7
Lj3g0007744 Lotus japonicus HOM05D007603 ORTHO05D009604 5.8e-12 75.1 177 43.5
TPR.G6485 Trifolium pratense HOM05D007603 ORTHO05D009604 7.6e-12 74.7 167 42.5
MBI06_g00805_MAGBIO Magnolia biondii HOM05D007603 ORTHO05D009604 1.7e-11 73.6 146 46.6
PSO541G0270 Papaver somniferum HOM05D007603 ORTHO05D009604 1.7e-11 73.6 194 40.2
Carub.0005s2128 Capsella rubella HOM05D007603 ORTHO05D009604 2.2e-11 73.2 176 39.2
Glyma.13G293400 Glycine max HOM05D007603 ORTHO05D009604 2.9e-11 72.8 134 46.3
HanXRQChr08g0231781 Helianthus annuus HOM05D007603 ORTHO05D009604 6.5e-11 71.6 176 42.0
Phvul.005G099400 Phaseolus vulgaris HOM05D007603 ORTHO05D009604 8.4e-11 71.2 140 44.3
CsaV3_7G003160 Cucumis sativus L. HOM05D007603 ORTHO05D009604 1.1e-10 70.9 192 38.0
BcaC07g39795 Brassica carinata HOM05D007603 ORTHO05D009604 1.4e-10 70.5 180 44.4
THA.LOC104823514 Tarenaya hassleriana HOM05D007603 ORTHO05D009604 1.9e-10 70.1 155 40.6
A09p47630 Brassica napus HOM05D007603 ORTHO05D009604 3.2e-10 69.3 180 45.0
TWI14G0603 Tripterygium wilfordii HOM05D007603 ORTHO05D009604 3.2e-10 69.3 132 47.0
Thhalv10010720m.g Eutrema salsugineum HOM05D007603 ORTHO05D009604 5.5e-10 68.6 178 39.9
Hund01003 Selenicereus undatus HOM05D007603 ORTHO05D009604 5.5e-10 68.6 129 41.9
EL10Ac9g20838 Beta vulgaris HOM05D007603 ORTHO05D009604 1.2e-09 67.4 146 39.7
Sp5g07770 Schrenkiella parvula HOM05D007603 ORTHO05D009604 2.1e-09 66.6 187 33.7
BcaB01g00169 Brassica carinata HOM05D007603 ORTHO05D009604 3.5e-09 65.9 176 40.9
Rhsim06G0135700 Rhododendron simsii HOM05D007603 ORTHO05D009604 3.5e-09 65.9 113 54.9
A07p22220 Brassica napus HOM05D007603 ORTHO05D009604 6.1e-09 65.1 179 36.3
BcaC08g44692 Brassica carinata HOM05D007603 ORTHO05D009604 1.3e-08 63.9 180 36.7
C06p22280 Brassica napus HOM05D007603 ORTHO05D009604 1.3e-08 63.9 180 36.7
BolC6t37414H Brassica oleracea HOM05D007603 ORTHO05D009604 1.3e-08 63.9 180 36.7
C08p29830 Brassica napus HOM05D007603 ORTHO05D009604 3.0e-08 62.8 172 43.6
BraA07t29901Z Brassica rapa HOM05D007603 ORTHO05D009604 3.9e-08 62.4 179 35.8
CARHR164600 Cardamine hirsuta HOM05D007603 ORTHO05D009604 3.9e-08 62.4 143 42.0
AL5G35760 Arabidopsis lyrata HOM05D007603 ORTHO05D009604 1.5e-07 60.5 179 41.9
PSO675G7067 Papaver somniferum HOM05D007603 ORTHO05D009604 2.5e-07 59.7 199 38.7
AT3G54680 Arabidopsis thaliana HOM05D007603 ORTHO05D009604 5.7e-07 58.5 180 38.9
FAN02G2478 Fragaria x ananassa HOM05D007603 ORTHO05D009604 2.2e-06 56.6 175 40.0
FAN14G3046 Fragaria x ananassa HOM05D007603 ORTHO05D016291 2.8e-06 56.2 150 40.7
BolC8t50594H Brassica oleracea HOM05D007603 ORTHO05D009604 3.7e-06 55.8 129 39.5
Medtr2g090770 Medicago truncatula HOM05D007603 ORTHO05D009604 4.8e-06 55.5 167 36.5
SalBow7G4116 Salvia bowleyana HOM05D007603 ORTHO05D009604 4.8e-06 55.5 68 61.8
TAR624G0387 Trochodendron aralioides HOM05D007603 ORTHO05D009604 4.8e-06 55.5 61 55.7


User provided reference genes

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