Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 4.9e-202 707.6 360 100.0
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.1e-160 567.8 367 82.8
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.6e-126 456.1 370 68.1
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 2.8e-125 452.6 370 67.8
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 2.4e-124 449.5 371 67.1
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 7.0e-124 448.0 379 66.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.2e-117 426.4 415 59.3
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 2.6e-78 296.6 385 48.1
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.9e-77 293.1 382 47.1
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 4.2e-76 289.3 381 48.3
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 6.0e-75 285.4 372 46.8
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 7.8e-75 285.0 283 59.4
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 5.6e-73 278.9 383 44.4
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 7.3e-73 278.5 381 45.9
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 9.6e-73 278.1 383 44.4
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.5e-70 270.8 387 46.0
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.4e-69 265.0 372 44.6
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.4e-68 264.2 391 44.0
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 3.2e-68 263.1 378 44.7
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 4.2e-68 262.7 378 45.5
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 5.4e-68 262.3 375 44.8
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 7.1e-68 261.9 385 44.7
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 7.1e-68 261.9 368 44.8
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 9.3e-68 261.5 237 58.2
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 9.3e-68 261.5 380 44.5
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 2.7e-67 260.0 385 44.2
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 3.5e-67 259.6 390 44.6
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.5e-67 259.6 379 43.8
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 3.5e-67 259.6 381 44.4
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.3e-66 257.7 393 42.7
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 8.7e-66 255.0 385 44.7
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-65 254.6 379 43.3
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.9e-65 253.8 395 44.1
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 2.5e-65 253.4 387 41.6
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 9.6e-65 251.5 382 42.7
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.6e-64 250.8 371 43.1
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 2.1e-64 250.4 382 42.7
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.4e-63 246.9 383 42.6
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 5.3e-63 245.7 386 43.0
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 2.0e-62 243.8 397 41.6
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 7.6e-62 241.9 211 60.2
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.3e-61 241.1 245 59.2
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.3e-61 241.1 223 55.2
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.2e-61 240.4 213 59.6
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 4.9e-61 239.2 379 42.0
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 6.4e-61 238.8 354 43.2
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 8.4e-61 238.4 387 41.9
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.1e-60 238.0 211 59.2
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.4e-60 237.7 213 59.2
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.4e-60 237.7 213 59.2
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 1.9e-60 237.3 380 41.6
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 4.2e-60 236.1 389 42.9
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 7.1e-60 235.3 223 57.4
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 7.1e-60 235.3 384 41.9
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 1.2e-59 234.6 395 41.0
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 2.7e-59 233.4 393 40.2
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 3.5e-59 233.0 355 43.1
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.6e-59 232.6 384 40.1
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.0e-59 232.3 379 40.1
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.0e-59 232.3 384 39.8
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 6.0e-59 232.3 378 41.0
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 6.0e-59 232.3 386 41.2
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 7.9e-59 231.9 393 40.7
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 3.0e-58 229.9 392 41.6
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 3.0e-58 229.9 384 39.6
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.9e-58 229.6 227 55.1
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 8.7e-58 228.4 242 53.7
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.1e-57 228.0 248 48.8
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 2.5e-57 226.9 378 39.7
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 3.3e-57 226.5 375 40.8
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 9.6e-57 224.9 380 41.1
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.6e-57 224.9 372 40.3
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 2.1e-56 223.8 382 39.8
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.1e-56 223.8 374 41.2
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.7e-56 223.0 212 56.6
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.1e-56 221.9 216 56.9
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.4e-55 221.1 392 40.3
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.4e-55 220.3 215 54.9
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 3.1e-55 219.9 401 39.7
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 4.0e-55 219.5 386 40.2
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 5.3e-55 219.2 239 49.4
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 1.2e-54 218.0 382 38.7
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.5e-54 217.6 373 40.8
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 2.0e-54 217.2 371 39.4
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.0e-54 217.2 382 39.5
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 2.6e-54 216.9 209 56.9
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 4.5e-54 216.1 162 67.3
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 5.8e-54 215.7 383 37.1
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.0e-53 214.9 385 40.0
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.8e-53 213.0 231 50.6
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 3.2e-52 209.9 378 39.4
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 2.1e-51 207.2 237 47.3
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 1.0e-50 204.9 164 64.6
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.3e-50 204.5 390 37.4
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.9e-50 203.0 247 47.4
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 3.9e-50 203.0 372 39.0
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 1.1e-49 201.4 348 38.8
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.3e-49 199.9 366 39.6
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 7.4e-49 198.7 374 38.5
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-48 198.0 374 38.2
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.1e-48 197.2 374 38.0
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 8.2e-48 195.3 209 53.1
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 1.1e-47 194.9 389 36.0
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.4e-47 194.5 374 37.7
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 3.1e-47 193.4 382 37.4
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 5.3e-47 192.6 188 55.9
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 5.3e-47 192.6 375 38.7
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 1.5e-46 191.0 161 61.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 2.6e-46 190.3 368 37.5
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 3.4e-46 189.9 382 37.2
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 3.4e-46 189.9 382 37.2
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 3.4e-46 189.9 382 37.2
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 3.4e-46 189.9 382 37.2
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.4e-46 189.9 378 36.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 3.4e-46 189.9 366 36.3
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 7.6e-46 188.7 216 45.4
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.7e-45 187.6 401 36.2
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.2e-45 187.2 383 35.2
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 8.4e-45 185.3 376 35.9
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 7.2e-44 182.2 221 48.0
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 2.1e-43 180.6 382 35.9
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 6.1e-43 179.1 382 35.3
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.0e-42 178.3 378 37.3
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.8e-42 177.6 376 35.9
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.3e-42 177.2 375 36.0
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 3.0e-42 176.8 375 35.7
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.5e-41 174.5 377 34.5
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.3e-40 171.4 399 34.3
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.2e-40 170.6 395 31.9
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 3.7e-40 169.9 284 40.8
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 6.9e-39 165.6 406 34.0
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 9.0e-39 165.2 313 37.4
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.5e-38 164.5 379 35.1
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.7e-37 161.0 178 50.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 2.9e-37 160.2 378 35.4
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 8.5e-37 158.7 339 36.6
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.6e-35 154.5 292 39.0
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 3.3e-33 146.7 204 40.7
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.3e-32 144.8 210 40.5
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 1.7e-32 144.4 364 33.0
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 4.1e-31 139.8 162 48.8
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 9.1e-31 138.7 288 36.1
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.3e-26 124.0 248 37.1
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 5.3e-23 112.8 274 31.4
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.9e-21 107.1 115 47.8
Cpa.g.sc1159.3 Carica papaya HOM05D002342 ORTHO05D002407 3.2e-20 103.6 71 67.6
Cpa.g.c47077 Carica papaya HOM05D002342 ORTHO05D002407 4.2e-20 103.2 70 68.6
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 2.1e-19 100.9 389 27.2
RcHm_v2.0_Chr7g0213881 Rosa chinensis HOM05D002342 ORTHO05D002407 2.3e-18 97.4 70 65.7
Eucgr.H02751 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.0e-18 97.1 112 48.2
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 3.0e-18 97.1 292 29.1
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 6.7e-18 95.9 122 42.6
Lj6A523T33 Lonicera japonica HOM05D002342 ORTHO05D002407 4.4e-17 93.2 65 67.7
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.7e-17 92.8 253 30.8
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 3.1e-15 87.0 179 31.3
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 2.9e-13 80.5 81 51.9
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 2.9e-13 80.5 81 51.9
Lj4A826T54 Lonicera japonica HOM05D002180 ORTHO05D001339 1.1e-12 78.6 80 51.2
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 9.4e-12 75.5 105 46.7
Lj6A523G32 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-11 75.1 120 40.8
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 2.7e-11 73.9 244 30.3
Actinidia38751 Actinidia chinensis HOM05D002342 ORTHO05D002407 6.1e-11 72.8 42 78.6
Os03g0803700 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 1.2e-09 68.6 75 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 5.7e-09 66.2 173 30.6
VMungo0251G3111 Vigna mungo HOM05D002342 ORTHO05D002407 2.4e-07 60.8 92 39.1


User provided reference genes

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