Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.9e-45 184.1 93 100.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-43 178.7 93 96.8
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.0e-36 153.7 93 81.7
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.7e-35 151.8 93 80.6
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 5.0e-34 147.5 93 79.6
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 1.5e-33 146.0 92 79.3
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 9.5e-33 143.3 84 83.3
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 9.5e-33 143.3 93 77.4
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 2.8e-32 141.7 93 76.3
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 5.2e-31 137.5 93 72.0
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.2e-30 136.3 93 68.8
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 5.8e-30 134.0 93 71.0
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.3e-29 132.9 93 68.8
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.7e-29 132.5 93 69.9
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.7e-29 132.5 93 68.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.7e-29 132.5 93 69.9
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.2e-29 132.1 93 71.0
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.7e-29 131.3 93 67.7
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 6.4e-29 130.6 93 67.7
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 6.4e-29 130.6 93 71.0
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.4e-29 130.6 93 71.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 8.3e-29 130.2 93 68.8
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.1e-28 129.8 93 67.7
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.4e-28 129.4 93 67.7
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 1.4e-28 129.4 86 75.6
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.4e-28 129.4 94 71.3
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.9e-28 129.0 93 67.7
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.9e-28 129.0 86 74.4
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.9e-28 129.0 93 68.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 4.1e-28 127.9 93 67.7
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.1e-28 127.9 93 68.8
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.1e-28 127.9 93 66.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 4.1e-28 127.9 93 71.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 5.4e-28 127.5 93 67.7
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.4e-28 127.5 93 68.8
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 5.4e-28 127.5 93 71.0
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 7.1e-28 127.1 93 67.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 7.1e-28 127.1 93 67.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 9.2e-28 126.7 93 66.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 9.2e-28 126.7 93 67.7
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 9.2e-28 126.7 94 69.1
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 66.7
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 66.7
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 69.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 69.9
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 69.9
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 71.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.2e-27 126.3 93 66.7
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.6e-27 125.9 93 65.6
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.1e-27 125.6 93 67.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.1e-27 125.6 93 68.8
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 2.1e-27 125.6 93 62.4
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 2.7e-27 125.2 93 63.4
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.7e-27 125.2 94 69.1
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 3.5e-27 124.8 93 68.8
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-27 124.8 93 68.8
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.5e-27 124.8 93 65.6
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-27 124.4 93 68.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 4.6e-27 124.4 94 68.1
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.0e-27 124.0 93 68.8
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 7.8e-27 123.6 93 65.6
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 7.8e-27 123.6 93 68.8
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 7.8e-27 123.6 93 68.8
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.0e-26 123.2 83 72.3
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.0e-26 123.2 93 66.7
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-26 123.2 93 67.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.0e-26 123.2 94 66.0
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.3e-26 122.9 93 65.6
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.3e-26 122.9 92 66.3
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.3e-26 122.9 89 68.5
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.3e-26 122.9 93 65.6
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 1.7e-26 122.5 84 71.4
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.7e-26 122.5 84 71.4
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.7e-26 122.5 93 65.6
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.7e-26 122.5 85 70.6
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.3e-26 122.1 93 66.7
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.3e-26 122.1 94 68.1
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.3e-26 122.1 93 68.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.3e-26 122.1 94 67.0
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.3e-26 122.1 94 67.0
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.0e-26 121.7 88 69.3
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 3.0e-26 121.7 93 63.4
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 3.0e-26 121.7 93 65.6
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.0e-26 121.7 93 65.6
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.9e-26 121.3 93 65.6
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 3.9e-26 121.3 93 65.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.1e-26 120.9 83 72.3
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 5.1e-26 120.9 93 65.6
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 6.6e-26 120.6 83 69.9
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 1.9e-25 119.0 96 62.5
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 4.3e-25 117.9 93 64.5
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 5.6e-25 117.5 83 68.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 7.3e-25 117.1 93 61.3
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 9.5e-25 116.7 86 64.0
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 1.2e-24 116.3 88 65.9
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 2.1e-24 115.5 83 68.7
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 2.1e-24 115.5 83 67.5
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 2.8e-24 115.2 93 64.5
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 4.7e-24 114.4 94 60.6
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 6.2e-24 114.0 93 65.6
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.1e-24 113.6 80 68.8
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-23 112.5 83 65.1
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 3.1e-23 111.7 83 65.1
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 4.0e-23 111.3 93 63.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.0e-23 111.3 88 65.9
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 4.0e-23 111.3 83 65.1
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 6.8e-23 110.5 88 64.8
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 8.9e-23 110.2 85 67.1
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 1.5e-22 109.4 84 63.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.5e-22 109.4 91 61.5
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.0e-22 109.0 89 59.6
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 3.4e-22 108.2 83 65.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.4e-22 108.2 91 61.5
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.4e-22 108.2 87 64.4
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.4e-22 107.8 83 66.3
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 5.8e-22 107.5 92 60.9
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 5.8e-22 107.5 83 63.9
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 5.8e-22 107.5 87 64.4
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 7.6e-22 107.1 83 63.9
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 7.6e-22 107.1 92 60.9
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 7.6e-22 107.1 92 60.9
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 7.6e-22 107.1 92 60.9
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 7.6e-22 107.1 89 62.9
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 9.9e-22 106.7 83 65.1
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.7e-21 105.9 92 60.9
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.7e-21 105.9 87 62.1
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.2e-21 105.5 83 63.9
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 6.4e-21 104.0 85 56.5
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 3.2e-20 101.7 75 65.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.2e-19 99.8 119 48.7
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 8.6e-18 93.6 85 58.8
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.6e-16 88.2 80 55.0
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.4e-15 86.3 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 3.1e-15 85.1 80 52.5
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 3.1e-15 85.1 54 72.2
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 4.0e-15 84.7 64 65.6
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 5.2e-15 84.3 60 66.7
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 9.9e-14 80.1 86 45.3
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.1e-12 76.6 84 46.4
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-12 76.3 58 58.6
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 3.2e-12 75.1 82 53.7
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 4.2e-12 74.7 91 48.4
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.1e-11 72.4 84 48.8
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.5e-11 71.6 60 58.3
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 2.3e-10 68.9 54 59.3
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 3.0e-10 68.6 80 42.5
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 3.9e-10 68.2 56 55.4
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.5e-09 66.2 86 45.3
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 7.3e-09 63.9 76 47.4
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.6e-09 63.5 83 51.8
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.3e-08 63.2 97 38.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.8e-08 62.0 65 50.8
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-07 59.7 43 67.4
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 1.2e-06 56.6 42 66.7


User provided reference genes

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