Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.7e-225 784.3 413 100.0
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.5e-175 619.8 413 83.8
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 7.2e-157 557.8 386 79.3
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 5.7e-146 521.5 420 73.1
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.4e-139 500.4 424 69.1
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 8.8e-139 497.7 422 69.4
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 6.2e-116 421.8 339 70.8
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 8.7e-78 295.0 424 47.6
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 4.2e-72 276.2 346 53.5
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.7e-71 273.5 331 55.9
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.8e-67 260.8 451 43.7
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 6.9e-67 258.8 454 42.7
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 1.3e-65 254.6 332 49.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 5.7e-61 239.2 352 47.4
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.8e-60 236.1 327 51.4
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.2e-58 231.5 362 45.0
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 2.0e-58 230.7 345 46.7
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 5.9e-58 229.2 458 38.9
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 2.9e-57 226.9 319 47.6
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 1.1e-56 224.9 348 46.0
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 5.5e-56 222.6 336 45.2
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 5.5e-56 222.6 350 45.4
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 7.2e-56 222.2 348 45.1
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 7.9e-55 218.8 338 45.9
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.8e-52 210.3 372 43.0
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 8.2e-52 208.8 338 43.5
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.0e-50 204.1 444 36.7
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.0e-49 201.8 431 40.6
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.0e-49 201.8 333 44.1
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.7e-49 201.1 354 43.8
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 2.9e-49 200.3 523 35.0
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 3.8e-49 199.9 376 39.1
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 3.8e-49 199.9 355 42.0
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 1.1e-48 198.4 397 41.1
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 3.6e-47 193.4 361 39.3
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 2.6e-45 187.2 314 44.3
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 3.3e-45 186.8 499 34.7
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 1.7e-44 184.5 316 42.4
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.8e-44 183.7 386 37.0
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 8.2e-44 182.2 322 42.9
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.1e-43 181.8 429 37.3
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.8e-43 181.0 449 35.4
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 6.9e-43 179.1 352 40.9
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 7.7e-42 175.6 308 42.5
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 7.7e-42 175.6 581 32.4
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.7e-41 174.5 329 40.1
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 6.5e-41 172.6 345 40.6
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 6.1e-39 166.0 326 39.3
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 6.1e-39 166.0 326 39.3
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 6.1e-39 166.0 326 39.3
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.0e-38 165.2 475 33.9
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.8e-38 164.5 599 30.6
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.3e-38 164.1 405 36.3
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 3.0e-38 163.7 422 37.2
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.1e-37 161.8 347 36.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 7.4e-37 159.1 353 37.1
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 9.7e-37 158.7 443 33.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 1.3e-36 158.3 355 35.8
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.7e-36 157.9 352 38.1
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 1.7e-36 157.9 432 34.5
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 2.8e-36 157.1 619 29.1
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 3.7e-36 156.8 347 36.6
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 6.3e-36 156.0 347 36.6
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 2.4e-35 154.1 358 38.0
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 4.1e-35 153.3 347 36.0
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 7.0e-35 152.5 305 37.0
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 1.6e-34 151.4 348 35.3
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 2.0e-34 151.0 361 35.2
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 7.7e-34 149.1 361 34.3
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.3e-33 148.3 242 43.0
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 1.7e-33 147.9 360 34.4
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 2.9e-33 147.1 412 36.2
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 3.8e-33 146.7 385 32.7
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 5.5e-32 142.9 412 34.7
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.2e-31 141.7 291 37.8
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.6e-31 141.4 402 34.6
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.6e-31 141.4 383 34.5
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 1.6e-31 141.4 342 38.6
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 6.1e-31 139.4 369 33.1
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 6.1e-31 139.4 378 33.6
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 1.8e-30 137.9 375 34.7
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 2.3e-30 137.5 270 39.3
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 3.0e-30 137.1 256 39.1
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 3.0e-30 137.1 278 38.1
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 3.0e-30 137.1 380 36.6
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 6.7e-30 136.0 440 33.6
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 2.0e-29 134.4 417 34.8
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 1.7e-28 131.3 492 32.3
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 4.5e-26 123.2 293 34.8
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 5.9e-26 122.9 127 57.5
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 5.9e-26 122.9 127 57.5
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 5.9e-26 122.9 327 35.2
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 3.8e-25 120.2 365 32.9
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.9e-24 117.9 179 46.4
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.2e-24 116.7 619 26.3
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 5.5e-24 116.3 421 31.4
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.7e-23 114.0 180 45.6
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 3.6e-23 113.6 315 33.3
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 8.0e-23 112.5 271 35.4
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 2.3e-22 110.9 248 37.5
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 2.3e-22 110.9 427 31.1
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 2.6e-21 107.5 417 30.9
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 3.4e-21 107.1 512 29.5
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.4e-21 107.1 371 31.3
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 4.4e-21 106.7 512 29.7
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 4.8e-20 103.2 290 33.8
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 8.3e-20 102.4 337 33.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 8.3e-20 102.4 125 54.4
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.8e-19 101.3 595 26.6
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.6e-18 98.2 157 40.8
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 1.6e-18 98.2 237 39.7
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.7e-17 94.7 618 25.4
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 3.8e-17 93.6 418 28.5
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 6.5e-17 92.8 386 31.3
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 6.5e-17 92.8 430 27.2
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.1e-16 92.0 617 25.6
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.9e-16 91.3 270 32.6
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 4.2e-16 90.1 141 45.4
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 2.8e-15 87.4 399 28.3
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 7.5e-13 79.3 467 26.1
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 3.7e-12 77.0 242 32.2
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 2.4e-11 74.3 372 28.8
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 2.0e-10 71.2 269 30.5
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 6.6e-09 66.2 80 50.0
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 1.1e-08 65.5 112 39.3
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.1e-08 65.5 390 25.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-07 61.6 242 28.9
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 2.1e-07 61.2 168 33.3
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 2.1e-07 61.2 168 33.3
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.4e-06 58.5 229 27.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-06 58.2 167 30.5
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-06 57.8 242 28.1
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.3e-06 57.8 194 29.4
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 2.3e-06 57.8 59 54.2
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 2.3e-06 57.8 65 47.7
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.0e-06 57.4 206 30.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 3.0e-06 57.4 305 25.6
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.0e-06 57.0 176 31.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.2e-06 56.6 167 31.1
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 8.9e-06 55.8 132 33.3


User provided reference genes

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