Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.7e-117 426.0 220 100.0
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.1e-100 370.2 220 86.4
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 4.3e-100 368.2 220 85.9
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 9.6e-100 367.1 220 85.5
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 6.2e-99 364.4 220 85.9
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 4.6e-94 348.2 264 70.8
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.0e-90 335.1 220 82.3
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 5.3e-90 334.7 216 77.3
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 7.6e-89 330.9 216 75.9
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 2.2e-88 329.3 222 75.7
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 4.9e-88 328.2 216 74.1
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 8.4e-88 327.4 218 75.7
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.1e-87 327.0 216 75.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.9e-87 326.2 218 76.6
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.9e-87 326.2 222 74.8
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 3.2e-87 325.5 217 76.0
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 4.2e-87 325.1 224 74.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.6e-86 323.2 220 74.5
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.6e-86 323.2 216 72.7
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 3.5e-86 322.0 223 72.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.6e-86 321.6 215 75.8
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 4.6e-86 321.6 213 75.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.3e-85 320.1 218 75.7
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.8e-85 319.7 216 75.5
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.3e-85 319.3 219 73.1
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.3e-85 319.3 217 73.7
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.9e-85 318.5 216 73.6
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 72.2
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 8.7e-85 317.4 215 74.4
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 8.7e-85 317.4 219 72.6
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.1e-84 317.0 216 73.6
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.1e-84 317.0 219 72.1
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.5e-84 316.6 216 72.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.5e-84 316.6 222 73.4
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.5e-84 316.6 219 72.6
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.5e-84 316.6 216 73.6
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 1.5e-84 316.6 216 71.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.5e-84 316.6 216 73.1
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.9e-84 316.2 216 70.8
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.9e-84 316.2 213 72.3
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.5e-84 315.8 220 73.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 4.3e-84 315.1 216 72.2
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 7.4e-84 314.3 218 73.4
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.3e-83 313.5 216 70.4
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.3e-83 313.5 216 71.8
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 2.8e-83 312.4 220 72.7
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.7e-83 312.0 219 71.7
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 3.7e-83 312.0 215 71.6
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 6.2e-83 311.2 226 70.8
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 8.1e-83 310.8 246 66.3
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 8.1e-83 310.8 205 75.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 8.1e-83 310.8 218 70.2
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.1e-82 310.5 223 72.2
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.1e-82 310.5 213 70.9
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-82 310.1 228 69.3
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.8e-82 309.7 216 72.7
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 2.4e-82 309.3 217 71.0
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.0e-82 308.5 217 69.1
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 4.0e-82 308.5 218 73.4
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.0e-82 308.5 217 71.4
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 4.0e-82 308.5 216 71.3
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 5.3e-82 308.1 217 71.0
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.2e-81 307.0 216 70.8
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.2e-81 307.0 219 70.3
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.5e-81 306.6 219 70.8
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.0e-81 306.2 216 72.7
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.6e-81 305.8 216 70.8
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.4e-81 305.4 223 71.3
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 3.4e-81 305.4 236 67.8
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 71.7
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.9e-80 302.4 219 68.9
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.9e-80 302.4 217 71.4
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 6.5e-80 301.2 219 68.5
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 8.4e-80 300.8 217 70.5
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.4e-79 300.1 226 67.7
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.9e-79 299.7 220 68.2
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.5e-79 298.1 223 70.0
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 9.3e-79 297.4 219 68.9
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 9.3e-79 297.4 216 67.6
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.5e-78 295.4 219 68.0
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 4.6e-78 295.0 217 68.7
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.6e-78 295.0 226 68.1
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.0e-77 293.9 219 66.7
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 1.0e-77 293.9 256 61.7
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 1.8e-77 293.1 217 69.6
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 66.7
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 67.1
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 66.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 66.7
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 2.3e-77 292.7 219 67.1
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 3.9e-77 292.0 209 72.2
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 8.7e-77 290.8 219 66.7
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.1e-76 290.4 219 67.1
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.5e-76 289.3 219 66.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.6e-75 286.6 215 65.6
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 3.7e-75 285.4 216 67.1
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 3.1e-74 282.3 229 62.9
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.2e-73 280.4 242 62.8
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.5e-73 280.0 202 67.8
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 1.3e-72 276.9 252 60.7
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.7e-72 276.6 218 64.2
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.9e-72 275.8 216 63.0
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.5e-71 272.7 158 81.6
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.5e-71 272.7 224 63.8
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 3.2e-71 272.3 222 62.6
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 4.2e-71 271.9 216 62.0
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 9.3e-71 270.8 209 67.5
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.6e-70 270.0 228 60.1
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 3.0e-69 265.8 188 69.7
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 6.7e-69 264.6 216 62.5
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.5e-68 262.7 201 66.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.6e-67 260.0 219 61.2
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.5e-65 253.4 183 69.9
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.1e-60 237.3 190 64.7
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-60 236.9 193 63.2
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 5.7e-60 235.0 242 51.7
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 4.2e-55 218.8 219 52.5
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 7.2e-55 218.0 218 56.9
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.6e-54 216.9 131 76.3
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.1e-52 210.7 121 81.0
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.6e-49 200.3 116 81.0
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.5e-47 193.7 207 51.2
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 2.5e-47 193.0 239 45.2
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 9.4e-47 191.0 249 44.2
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-39 167.2 168 54.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.5e-36 157.1 100 73.0
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.2e-35 153.3 252 36.1
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 3.2e-31 139.4 179 46.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 3.7e-27 125.9 245 37.1
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.6e-12 76.6 42 83.3
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 2.6e-12 76.6 84 53.6
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.6e-09 67.4 44 70.5
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.5e-09 66.2 36 77.8
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 3.0e-08 63.2 207 28.5
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 2.5e-07 60.1 162 25.3
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 4.3e-07 59.3 43 65.1
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 7.3e-07 58.5 163 25.8
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 1.6e-06 57.4 27 96.3
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 6.2e-06 55.5 191 23.6
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 6.2e-06 55.5 36 75.0
Ca_24534_v3 Cicer arietinum L. HOM05D001916 ORTHO05D003272 8.1e-06 55.1 162 24.1


User provided reference genes

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