Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.4e-128 463.0 239 100.0
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.4e-119 431.8 239 94.6
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 4.5e-95 351.7 256 74.2
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.7e-94 349.7 256 73.8
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 3.2e-93 345.5 256 73.0
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.0e-82 309.7 253 69.2
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.6e-76 290.0 258 64.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.6e-74 282.7 254 64.6
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.8e-72 276.6 247 64.8
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 6.4e-65 251.5 254 61.8
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 8.1e-60 234.6 281 53.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.1e-59 232.6 251 57.4
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.4e-56 221.9 266 53.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.3e-54 217.2 265 52.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.0e-54 216.1 268 53.4
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.3e-53 212.6 262 54.6
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-50 204.1 258 51.6
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.5e-50 203.8 174 65.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.4e-50 202.2 265 51.7
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 8.4e-49 198.0 269 50.2
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.4e-49 198.0 265 49.8
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.4e-48 197.2 257 51.0
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.4e-48 197.2 269 49.8
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.4e-48 197.2 254 52.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.9e-48 196.8 253 50.2
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 3.2e-48 196.1 255 51.4
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.1e-48 195.7 295 47.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 4.1e-48 195.7 253 49.4
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.6e-47 193.7 266 47.4
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 2.1e-47 193.4 262 50.0
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 3.5e-47 192.6 260 48.8
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.5e-47 192.6 253 49.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.3e-46 190.7 265 50.9
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.0e-46 189.5 264 47.7
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 3.0e-46 189.5 267 49.1
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.1e-45 187.6 262 49.6
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 5.6e-45 185.3 264 49.6
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.2e-44 184.1 260 50.4
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 1.2e-44 184.1 258 47.3
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 4.7e-44 182.2 253 49.8
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.1e-43 181.0 264 49.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.1e-43 181.0 306 44.4
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.8e-43 180.3 273 46.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.4e-43 179.9 263 48.3
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 4.0e-43 179.1 261 46.7
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 4.0e-43 179.1 266 49.2
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.9e-43 178.3 235 53.2
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 4.4e-42 175.6 312 42.3
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 5.8e-42 175.3 248 51.2
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.6e-42 174.9 231 54.1
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 7.6e-42 174.9 186 56.5
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.3e-41 174.1 264 47.7
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 3.8e-41 172.6 264 48.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 4.9e-41 172.2 265 48.3
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 4.9e-41 172.2 263 44.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.4e-40 170.6 257 45.9
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.2e-40 169.5 253 45.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 4.2e-40 169.1 264 44.7
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.4e-40 168.7 258 46.9
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 5.4e-40 168.7 246 46.7
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 7.1e-40 168.3 262 47.3
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 7.1e-40 168.3 261 47.9
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 9.3e-40 167.9 270 47.0
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.2e-39 167.5 189 56.1
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.2e-39 167.5 254 47.2
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.6e-39 167.2 189 55.6
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.7e-39 166.4 258 45.7
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 3.5e-39 166.0 191 54.5
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 6.0e-39 165.2 248 46.0
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.0e-38 164.5 189 54.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.0e-38 164.5 190 54.2
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.0e-38 164.5 270 43.3
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.7e-38 163.7 281 44.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 5.1e-38 162.2 263 43.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.1e-37 161.0 267 44.9
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 5.6e-37 158.7 271 43.9
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 5.6e-37 158.7 271 43.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 9.6e-37 157.9 272 43.0
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.6e-36 157.1 267 43.8
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 6.2e-36 155.2 259 45.2
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.4e-35 154.1 239 46.4
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.4e-35 154.1 257 43.6
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-35 152.9 258 44.6
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-35 152.9 258 44.6
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 4.0e-35 152.5 267 44.6
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 43.2
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 43.2
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 44.0
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-35 152.5 259 44.0
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 4.0e-35 152.5 267 43.8
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.3e-35 152.1 267 43.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 5.3e-35 152.1 261 42.5
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.9e-35 151.8 267 41.9
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.2e-34 151.0 261 44.1
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.6e-34 149.8 244 45.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.6e-34 149.8 274 44.2
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.8e-34 148.7 259 43.6
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 7.6e-34 148.3 266 42.1
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 9.9e-34 147.9 260 43.1
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.3e-33 147.5 255 46.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.3e-33 147.5 263 43.0
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.3e-33 147.5 243 46.5
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.7e-33 147.1 249 44.6
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.9e-33 146.4 249 44.2
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 3.8e-33 146.0 262 43.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 8.4e-33 144.8 245 46.5
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.1e-32 144.4 254 46.1
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-32 144.1 256 42.2
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.2e-32 142.9 194 51.0
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 4.2e-32 142.5 251 43.4
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.4e-32 142.1 243 43.2
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 9.3e-32 141.4 244 45.5
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 9.3e-32 141.4 244 45.5
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-31 140.2 260 41.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 3.5e-31 139.4 241 43.2
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 3.5e-31 139.4 241 43.2
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 3.5e-31 139.4 244 43.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.5e-31 139.4 255 42.0
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-31 139.0 254 42.1
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 4.6e-31 139.0 262 41.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 6.0e-31 138.7 186 47.8
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 6.0e-31 138.7 208 48.6
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.0e-30 137.9 254 43.7
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-30 137.5 158 55.1
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.3e-30 137.5 250 41.6
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.0e-30 136.3 230 45.2
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 3.9e-30 136.0 257 42.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 6.7e-30 135.2 244 43.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.1e-29 134.4 257 42.0
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.5e-29 134.0 261 42.1
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.5e-29 133.3 252 44.0
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.3e-29 132.9 260 41.9
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 4.8e-28 129.0 187 49.2
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 6.2e-28 128.6 248 43.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 4.0e-27 125.9 283 37.1
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 5.3e-27 125.6 262 41.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 9.0e-27 124.8 248 39.5
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 1.2e-26 124.4 285 37.2
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 2.6e-26 123.2 191 41.9
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 4.5e-26 122.5 262 39.7
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 5.8e-26 122.1 253 40.3
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.8e-26 122.1 192 42.2
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.7e-25 120.6 223 43.0
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.1e-24 117.9 267 37.1
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.2e-23 114.4 256 35.9
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.1e-23 113.6 208 39.9
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.9e-23 111.7 190 44.2
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 3.0e-22 109.8 186 43.5
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.1e-22 109.0 187 41.7
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.1e-21 107.8 121 55.4
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.9e-21 107.1 185 39.5
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.4e-21 105.1 242 38.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.4e-21 105.1 240 33.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 7.4e-21 105.1 132 48.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.3e-20 104.4 189 42.3
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 4.8e-20 102.4 346 29.5
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.8e-19 100.5 196 39.8
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.1e-19 99.8 243 34.2
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.5e-18 97.4 158 41.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 3.4e-18 96.3 253 33.6
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.6e-18 95.1 171 40.9
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.9e-17 93.2 249 36.1
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.4e-17 91.7 239 37.2
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.4e-16 90.9 171 39.8
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 3.2e-16 89.7 173 38.7
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.9e-14 82.8 186 36.6
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 3.9e-14 82.8 151 41.7
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.1e-13 81.3 240 32.1
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 1.9e-13 80.5 186 35.5
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 7.4e-13 78.6 120 41.7
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.4e-11 73.6 76 55.3
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.1e-11 72.8 166 34.3
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.6e-10 70.1 96 45.8
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 1.4e-08 64.3 169 32.0
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 2.5e-08 63.5 207 34.3
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 3.2e-08 63.2 182 35.7
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 4.2e-08 62.8 49 61.2
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.6e-07 60.8 102 43.1
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-07 60.5 95 41.1
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 2.7e-07 60.1 159 31.4
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.4e-06 57.8 189 30.7
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 1.8e-06 57.4 176 33.0
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 3.0e-06 56.6 77 41.6
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 3.0e-06 56.6 166 30.1
Zm00001eb245720 Zea mays HOM05D020767 ORTHO05D003885 3.9e-06 56.2 185 33.5


User provided reference genes

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