Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 2370.9 1180 100.0
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 2041.9 1172 87.5
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1833.2 1157 80.4
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1792.7 1145 78.9
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1768.4 1170 76.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1343.9 1179 59.2
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1341.6 1173 59.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1248.0 1142 56.0
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1247.3 1157 54.6
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1232.6 1148 55.3
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1223.8 1164 54.4
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1218.4 1151 55.1
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1196.8 1087 55.4
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1195.3 1165 53.2
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 0.0e+00 1162.9 981 59.5
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 0.0e+00 1154.4 750 77.3
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1152.9 1157 52.3
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 0.0e+00 1152.1 1043 55.5
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1144.0 1122 52.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1140.9 889 64.5
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1135.9 1148 51.1
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1135.6 1166 50.3
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1135.2 1162 51.1
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 1135 51.3
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 0.0e+00 1133.2 1101 53.4
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1124.4 1148 51.9
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1124.0 1146 51.7
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1122.5 1125 51.6
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1121.3 1139 51.7
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1119.8 1071 52.8
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1119.0 1093 53.2
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1118.6 1181 51.1
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1118.6 1090 52.6
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1114.0 1132 50.6
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1114.0 1100 52.3
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1114.0 1100 52.3
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1112.4 1178 50.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1112.1 1170 50.4
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1105.9 1090 52.8
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 1151 49.8
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 1094 51.7
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 0.0e+00 1101.3 1049 52.4
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1100.5 1069 51.8
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 0.0e+00 1099.0 1170 50.4
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1099.0 1069 51.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1096.6 1158 51.3
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1092.4 1127 50.7
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1085.9 1075 51.4
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 8.1e-312 1073.5 1149 50.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 2.0e-308 1062.8 1007 52.2
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 2.0e-308 1062.8 1116 49.8
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 4.4e-308 1061.6 1099 51.0
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 5.5e-303 1044.6 1075 51.1
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.0e-300 1036.2 1030 51.4
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 9.1e-298 1027.3 1095 49.6
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-296 1023.5 1123 49.8
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 2.3e-296 1022.7 1161 48.1
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 3.8e-296 1021.9 1109 49.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 6.6e-296 1021.1 1070 49.5
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 4.2e-295 1018.5 1104 48.6
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 7.2e-295 1017.7 1087 49.3
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 1.2e-294 1016.9 1074 49.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 2.6e-292 1009.2 1071 48.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 6.3e-291 1004.6 1074 49.6
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 8.3e-291 1004.2 944 55.8
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 1.8e-290 1003.0 960 53.8
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 7.8e-289 997.7 1090 48.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 6.6e-288 994.6 1083 48.8
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 1.1e-287 993.8 1071 47.5
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.9e-287 993.0 1076 48.6
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 4.3e-287 991.9 1089 48.5
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 5.6e-287 991.5 1082 48.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 8.0e-286 987.6 993 50.6
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.0e-280 970.7 1153 47.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 4.9e-275 951.8 1145 46.5
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 1.6e-270 936.8 1092 47.0
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 5.8e-268 928.3 1181 43.9
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 4.6e-265 918.7 938 51.0
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.9e-263 913.3 901 53.2
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.6e-263 911.8 919 51.5
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 6.2e-262 908.3 740 61.5
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.1e-261 907.5 1011 47.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.6e-260 902.9 786 56.2
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 8.4e-259 897.9 921 50.4
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.3e-256 890.6 890 51.1
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 3.6e-254 882.5 1126 43.8
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 3.2e-250 869.4 1083 44.7
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.1e-247 860.9 1143 43.9
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.0e-233 812.0 710 57.3
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 1.3e-227 794.3 766 53.4
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.1e-223 781.2 1093 42.1
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.6e-222 777.3 542 67.0
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 8.5e-211 738.4 1134 37.1
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.5e-204 716.5 592 59.0
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.4e-189 667.9 685 52.3
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 7.5e-167 592.4 595 50.8
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.7e-164 583.9 666 46.2
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 2.5e-130 471.1 516 49.0
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.6e-116 423.7 393 54.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.3e-113 413.3 416 51.0
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.8e-97 360.5 363 52.3
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.9e-91 340.9 396 47.0
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.4e-88 331.6 1003 27.3
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.6e-79 302.4 218 64.2
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.5e-71 274.2 337 44.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.6e-66 258.5 218 55.5
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.4e-64 251.9 226 54.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.8e-58 229.9 216 54.2
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.7e-57 228.0 216 54.6
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.2e-56 223.4 216 53.2
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 7.8e-55 220.3 209 51.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.3e-49 203.0 236 46.2
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.6e-45 187.6 191 50.3
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 5.6e-45 187.6 134 62.7
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 9.5e-45 186.8 914 23.7
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.7e-41 174.9 140 61.4
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.1e-39 169.1 130 63.1
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.5e-39 168.3 363 33.6
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.3e-38 166.4 224 42.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.3e-38 165.6 134 62.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 8.6e-38 163.7 206 38.3
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-34 153.3 1075 21.8
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.2e-34 153.3 115 57.4
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 7.6e-34 150.6 154 45.5
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.7e-31 142.1 467 23.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 6.6e-30 137.5 126 51.6
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 4.2e-24 118.2 134 46.3
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 3.5e-23 115.2 122 50.0
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.6e-22 110.9 393 25.4
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.6e-20 106.3 83 56.6
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.4e-19 102.4 83 54.2
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-17 96.3 77 59.7
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.7e-15 89.0 370 25.9
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 6.0e-15 87.8 381 25.5
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 1.0e-14 87.0 80 53.8
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 5.1e-14 84.7 229 26.2
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.8e-11 76.3 434 23.5
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.1e-11 75.5 339 25.1
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.2e-10 73.6 313 25.2
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 5.8e-10 71.2 58 58.6
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.3e-09 70.1 61 54.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.7e-09 69.7 58 56.9
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.7e-09 69.7 57 59.6
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 1.4e-08 66.6 67 52.2
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 1.2e-07 63.5 65 46.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.7e-07 62.4 114 33.3
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 3.5e-07 62.0 110 35.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.8e-06 59.7 45 53.3
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 5.1e-06 58.2 85 38.8
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.7e-06 57.4 52 48.1


User provided reference genes

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