Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.8e-146 521.2 268 100.0
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.0e-144 515.8 268 98.1
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.8e-128 460.7 269 90.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.1e-126 456.8 267 89.9
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 6.1e-125 451.1 273 87.2
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.5e-118 429.9 266 80.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.4e-115 418.3 270 80.4
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.3e-114 416.8 266 80.5
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 7.0e-113 411.0 267 80.9
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.7e-111 406.4 267 77.5
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.3e-110 402.1 267 78.3
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 9.5e-110 400.6 267 77.5
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.8e-109 399.1 267 77.5
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 3.6e-109 398.7 270 76.3
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.1e-108 397.1 264 76.5
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.8e-108 396.4 263 78.3
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 6.8e-108 394.4 267 75.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 9.9e-107 390.6 263 76.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 6.4e-106 387.9 265 75.1
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 8.3e-106 387.5 265 73.2
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 3.2e-105 385.6 266 75.9
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 3.2e-105 385.6 266 75.2
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 5.4e-105 384.8 274 75.2
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.1e-104 382.9 265 74.7
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.1e-104 382.9 272 73.5
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 2.7e-104 382.5 275 73.5
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.7e-103 379.8 267 73.4
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.3e-103 379.4 263 73.8
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 6.6e-103 377.9 276 72.8
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.1e-102 377.1 269 72.5
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.5e-102 375.9 271 70.8
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 3.3e-102 375.6 266 72.9
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 4.3e-102 375.2 275 72.0
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.6e-101 372.1 271 71.2
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 6.2e-101 371.3 270 71.1
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.8e-100 369.8 267 71.2
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.4e-100 369.4 269 72.9
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 6.8e-100 367.9 270 71.1
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-99 366.3 273 70.3
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 4.4e-99 365.2 266 71.4
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 5.8e-99 364.8 272 70.2
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 5.8e-99 364.8 274 70.4
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 7.6e-99 364.4 273 71.8
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-98 363.2 269 70.6
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.9e-98 362.5 263 71.5
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 3.8e-98 362.1 274 69.0
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 3.8e-98 362.1 273 68.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.9e-98 361.7 269 69.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 4.9e-98 361.7 263 71.5
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 6.4e-98 361.3 264 70.1
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 1.4e-97 360.1 267 69.3
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.9e-97 359.8 266 70.7
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.4e-97 359.4 268 69.8
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 5.4e-97 358.2 272 69.5
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 5.4e-97 358.2 268 68.7
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.2e-96 357.1 266 70.3
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 2.7e-96 355.9 264 69.3
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 3.5e-96 355.5 264 69.7
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 3.5e-96 355.5 264 69.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.5e-96 355.5 271 68.3
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 4.6e-96 355.1 273 68.1
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.6e-96 355.1 258 70.9
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 6.0e-96 354.8 266 69.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 7.8e-96 354.4 263 70.7
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.3e-95 353.6 264 70.1
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.3e-95 353.6 272 69.5
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.7e-95 353.2 261 69.3
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.3e-95 352.8 267 68.2
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 2.3e-95 352.8 183 95.6
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.0e-95 352.4 227 78.0
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 3.9e-95 352.1 257 68.5
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 6.6e-95 351.3 277 67.5
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.9e-94 349.7 274 67.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 5.6e-94 348.2 263 68.8
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 7.3e-94 347.8 266 68.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 9.6e-94 347.4 232 74.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.1e-93 346.3 220 76.4
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 3.6e-93 345.5 261 69.7
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.1e-93 344.4 261 69.3
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.1e-93 344.4 261 69.3
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.1e-93 344.4 261 68.6
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.1e-93 344.4 261 68.6
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.1e-92 344.0 226 73.5
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-92 344.0 259 69.1
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 1.1e-92 344.0 263 69.2
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.8e-92 343.2 272 67.3
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.0e-92 342.0 273 67.0
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 6.9e-92 341.3 261 68.2
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.5e-91 340.1 263 66.9
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.5e-91 340.1 263 67.3
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.4e-91 339.0 251 70.5
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.4e-91 338.6 251 70.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 9.9e-91 337.4 262 66.4
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 9.9e-91 337.4 262 66.4
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 6.4e-90 334.7 246 69.1
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 3.2e-89 332.4 218 75.2
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 7.1e-89 331.3 237 69.6
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 7.8e-88 327.8 309 58.9
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 6.2e-85 318.2 261 64.4
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 6.9e-84 314.7 233 68.2
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.6e-80 303.5 263 63.1
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.7e-80 302.8 270 61.5
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 6.0e-80 301.6 218 67.9
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 6.7e-79 298.1 221 66.5
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.6e-77 293.5 228 67.5
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 2.0e-75 286.6 177 87.0
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.5e-70 270.4 196 73.0
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.5e-70 270.4 196 73.0
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-68 264.2 191 70.2
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 9.0e-68 261.2 265 56.2
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.0e-66 257.7 239 54.4
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.3e-63 247.3 194 58.2
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 5.1e-63 245.4 222 51.4
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.1e-62 244.2 251 49.8
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 9.7e-62 241.1 180 61.7
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 3.6e-56 222.6 134 84.3
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 4.3e-54 215.7 141 70.9
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 5.3e-44 182.2 153 52.9
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.5e-43 180.6 164 64.0
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.8e-42 176.0 113 75.2
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 4.7e-40 169.1 165 45.5
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 2.8e-37 159.8 265 40.0
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 2.8e-37 159.8 265 40.0
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.7e-37 159.5 115 66.1
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 4.8e-37 159.1 265 40.0
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-31 141.4 70 97.1
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 5.2e-31 139.0 89 79.8
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.3e-29 134.4 76 89.5
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.1e-25 121.3 179 35.8
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.8e-20 104.0 70 72.9
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 2.1e-16 90.5 170 32.9
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 6.1e-16 89.0 66 68.2
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 4.4e-14 82.8 60 68.3
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.8e-14 81.6 92 55.4
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.7e-11 73.6 102 44.1
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 7.8e-11 72.0 39 87.2
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 2.6e-06 57.0 43 69.8
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 9.8e-06 55.1 46 54.3


User provided reference genes

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