Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.2e-105 384.8 206 100.0
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 8.5e-66 254.2 206 69.4
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 1.5e-59 233.4 207 64.7
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 3.7e-53 212.2 205 62.9
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 1.4e-52 210.3 207 62.3
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 2.0e-51 206.5 201 63.2
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 1.5e-49 200.3 195 58.5
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.0e-46 189.9 202 56.9
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.2e-45 186.4 182 62.1
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.7e-45 185.7 170 64.1
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.3e-45 184.9 196 56.6
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 3.1e-44 182.6 204 60.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 6.5e-42 174.9 200 53.0
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.5e-41 171.8 206 52.9
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.7e-40 168.7 196 55.6
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 6.1e-40 168.3 200 51.0
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 4.0e-39 165.6 173 60.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.5e-38 163.7 194 54.1
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 9.8e-38 161.0 196 53.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 8.3e-37 157.9 213 51.6
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.8e-36 156.8 190 51.1
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 9.1e-36 154.5 203 51.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 2.0e-35 153.3 203 47.3
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.7e-35 152.9 196 50.0
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.5e-35 152.1 196 51.5
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 4.5e-35 152.1 202 49.5
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 4.5e-35 152.1 189 50.3
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 1.0e-34 151.0 211 47.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.3e-34 150.6 189 49.7
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 1.3e-34 150.6 192 51.6
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 2.3e-34 149.8 189 50.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.3e-34 149.8 202 46.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 5.0e-34 148.7 202 44.6
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 6.5e-34 148.3 189 49.2
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 8.6e-34 147.9 195 49.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.1e-33 147.5 202 45.5
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.5e-33 146.4 165 54.5
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 3.3e-33 146.0 205 43.9
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 2.8e-32 142.9 193 47.2
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 6.1e-32 141.7 194 46.9
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 6.1e-32 141.7 192 50.0
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.0e-32 141.4 192 50.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 1.4e-31 140.6 192 50.0
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 1.4e-31 140.6 203 48.8
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.4e-31 140.6 196 48.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.8e-31 140.2 185 51.4
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 4.0e-31 139.0 201 46.3
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.2e-31 138.7 194 49.5
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.2e-30 137.5 183 48.1
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 2.6e-30 136.3 193 45.6
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 3.4e-30 136.0 193 48.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 4.4e-30 135.6 200 44.5
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.4e-30 135.6 187 49.7
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 5.7e-30 135.2 187 46.0
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 7.5e-30 134.8 197 44.2
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.2e-29 133.3 191 49.2
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.1e-28 131.0 205 46.8
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.1e-28 131.0 197 48.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.8e-28 130.2 192 46.9
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.4e-28 129.8 207 43.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.4e-28 129.8 195 46.7
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 4.1e-28 129.0 191 45.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 4.1e-28 129.0 200 46.0
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 7.0e-28 128.3 203 44.8
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.2e-28 127.9 186 46.2
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.2e-28 127.9 202 44.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-27 127.1 188 46.3
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.7e-27 126.3 188 46.3
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.0e-26 124.4 187 46.5
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.3e-26 124.0 200 47.5
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 1.3e-26 124.0 175 48.0
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.3e-26 123.2 198 42.9
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 5.0e-26 122.1 191 44.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.5e-25 120.6 188 45.2
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 3.3e-25 119.4 190 48.4
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 5.6e-25 118.6 185 43.2
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 5.6e-25 118.6 153 49.0
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 5.6e-25 118.6 185 42.7
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.3e-25 118.2 187 45.5
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 7.3e-25 118.2 211 42.7
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.2e-24 117.5 202 41.1
Nitab4.5_0003738g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 2.1e-24 116.7 102 67.6
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 6.8e-23 111.7 192 43.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 1.5e-22 110.5 144 52.1
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 4.4e-22 109.0 194 41.2
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 9.8e-22 107.8 170 44.1
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 2.9e-21 106.3 188 40.4
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.7e-21 105.9 188 43.6
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 8.3e-21 104.8 189 43.9
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.1e-20 104.4 206 39.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.8e-20 103.6 148 51.4
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 3.2e-20 102.8 194 39.7
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.4e-20 102.1 189 41.8
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 5.4e-20 102.1 189 41.8
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 7.0e-20 101.7 146 47.9
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 2.7e-19 99.8 206 37.4
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.7e-19 99.8 147 49.7
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 3.5e-19 99.4 178 41.0
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.6e-19 99.0 197 38.6
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 6.0e-19 98.6 194 38.1
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.9e-18 95.9 186 41.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 8.6e-18 94.7 202 37.1
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 8.6e-18 94.7 203 37.9
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.1e-17 94.4 184 41.3
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.3e-17 92.4 206 37.4
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.3e-17 92.4 189 40.7
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.6e-17 92.0 189 40.2
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 7.3e-17 91.7 170 44.1
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-16 90.9 198 37.9
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.6e-16 90.5 170 42.9
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.6e-16 90.5 170 42.9
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.6e-16 90.5 191 40.3
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 2.8e-16 89.7 169 42.6
Oeu051227.1 Olea europaea HOM05D004361 ORTHO05D004706 3.6e-16 89.4 150 43.3
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.2e-16 88.6 195 40.5
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 6.2e-16 88.6 168 39.9
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 6.2e-16 88.6 202 37.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 8.0e-16 88.2 174 41.4
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.8e-15 87.0 172 40.7
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 1.8e-15 87.0 171 39.2
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 1.8e-15 87.0 191 35.6
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 4.0e-15 85.9 173 39.9
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 6.8e-15 85.1 170 41.2
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 8.9e-15 84.7 136 50.0
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 1.5e-14 84.0 176 36.9
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 2.6e-14 83.2 183 37.7
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 4.4e-14 82.4 193 36.8
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 4.4e-14 82.4 168 39.9
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 7.5e-14 81.6 172 37.8
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 9.8e-14 81.3 176 38.1
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.3e-13 80.9 170 38.8
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.7e-13 80.5 177 39.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 2.2e-13 80.1 187 37.4
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.2e-13 80.1 59 71.2
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-12 77.0 93 46.2
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.9e-12 77.0 175 38.3
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 2.4e-12 76.6 204 32.8
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 4.1e-12 75.9 175 37.7
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 5.4e-12 75.5 182 36.8
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 9.2e-12 74.7 170 37.6
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.2e-11 74.3 175 37.1
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.2e-11 74.3 175 37.1
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 2.3e-10 70.1 178 35.4
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 3.9e-10 69.3 204 31.9
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-10 69.3 178 34.8
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 3.3e-09 66.2 184 33.7
MELO3C032917.2 Cucumis melo HOM05D004361 ORTHO05D004706 7.3e-09 65.1 165 35.8
Lj2E274T2 Lonicera japonica HOM05D004361 ORTHO05D004706 9.5e-09 64.7 102 43.1
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 2.1e-08 63.5 190 31.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 2.8e-08 63.2 181 34.8
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 3.6e-08 62.8 172 33.7
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 4.7e-08 62.4 99 45.5
PSO675G1253 Papaver somniferum HOM05D004361 ORTHO05D004706 8.1e-08 61.6 208 32.2
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 1.8e-07 60.5 167 34.1
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 3.1e-07 59.7 55 63.6
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 8.9e-07 58.2 195 30.8
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.0e-06 57.0 95 42.1
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 3.4e-06 56.2 164 32.9
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 7.5e-06 55.1 50 52.0


User provided reference genes

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