Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.8e-211 738.4 389 100.0
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.9e-209 729.9 389 98.7
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.9e-176 622.1 400 81.0
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 8.5e-176 620.5 400 80.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.2e-169 600.1 400 78.2
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.0e-165 587.0 406 80.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 9.1e-154 547.4 390 75.9
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 4.7e-150 535.0 439 65.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 8.0e-150 534.3 369 73.4
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 7.5e-148 527.7 388 69.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 9.8e-148 527.3 395 70.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.8e-146 523.1 408 66.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.4e-146 522.7 384 70.8
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 3.2e-146 522.3 389 68.9
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.2e-146 522.3 399 68.7
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.2e-146 522.3 388 68.6
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 7.0e-146 521.2 409 67.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 2.7e-145 519.2 402 68.4
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 4.5e-145 518.5 371 71.4
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.0e-144 517.3 387 69.0
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-144 516.5 380 69.2
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.9e-144 515.4 371 71.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.9e-144 515.4 392 68.1
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 8.6e-144 514.2 402 67.9
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.1e-143 513.8 404 65.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.5e-143 512.7 393 70.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.3e-143 512.3 382 68.6
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.6e-143 511.5 393 67.4
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 9.5e-143 510.8 387 69.3
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 9.5e-143 510.8 394 67.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-142 510.0 402 69.9
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.7e-142 508.4 386 66.6
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.3e-141 506.1 387 66.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.2e-140 503.8 419 63.7
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.5e-140 503.4 424 63.9
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 7.5e-140 501.1 407 67.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.7e-139 500.0 361 68.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 2.2e-139 499.6 358 70.7
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.2e-139 499.6 393 64.9
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.2e-139 499.6 378 68.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 2.9e-139 499.2 421 63.4
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.7e-139 498.8 422 64.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.4e-139 498.0 378 68.0
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 6.4e-139 498.0 386 67.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.4e-138 496.1 378 67.7
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 4.1e-138 495.4 358 70.4
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 7.0e-138 494.6 393 65.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.0e-137 493.0 380 67.4
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 3.5e-137 492.3 371 66.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 1.0e-136 490.7 387 65.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.0e-136 490.7 401 63.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.3e-136 490.3 375 69.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.9e-136 488.8 292 79.5
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.0e-136 488.4 358 67.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.6e-136 488.0 403 63.8
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.1e-135 487.3 406 64.5
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.1e-135 487.3 356 68.8
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.5e-135 486.9 368 67.9
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.5e-135 486.9 344 72.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.5e-135 484.2 388 66.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 9.5e-135 484.2 356 68.8
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 9.5e-135 484.2 439 60.1
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.6e-134 483.4 394 65.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.1e-134 483.0 287 80.1
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.8e-134 482.6 287 81.2
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.0e-134 481.1 287 81.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 8.0e-134 481.1 356 67.7
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.4e-133 480.3 356 68.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 4.0e-133 478.8 358 69.0
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.2e-133 478.4 414 62.6
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.2e-132 477.2 358 68.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.0e-132 476.5 359 68.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.0e-132 476.5 359 68.0
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 9.8e-132 474.2 377 66.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.7e-131 473.4 390 62.8
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 4.9e-131 471.9 389 62.2
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.4e-130 469.5 385 64.2
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.2e-130 469.2 387 62.8
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.1e-130 468.8 358 65.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 9.2e-130 467.6 371 65.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 2.1e-129 466.5 386 64.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 2.3e-128 463.0 362 64.6
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.1e-128 461.8 380 61.8
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.9e-127 459.9 375 63.5
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.2e-124 450.7 380 61.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.4e-124 449.1 384 62.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.7e-123 446.8 361 61.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.2e-123 446.4 377 59.2
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 4.9e-123 445.3 384 58.9
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.4e-122 443.7 392 59.9
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.9e-122 443.4 392 60.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.5e-121 439.1 392 59.4
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.1e-119 434.1 395 60.0
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.9e-119 433.3 359 62.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.6e-119 431.8 390 59.7
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 7.3e-119 431.4 287 74.2
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.1e-118 429.9 394 58.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.8e-118 429.5 382 60.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.7e-118 428.7 390 58.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.4e-117 426.4 357 62.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 4.0e-117 425.6 387 58.9
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-117 425.6 388 58.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.2e-116 424.1 390 58.5
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 4.4e-116 422.2 391 58.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.9e-115 419.5 391 58.3
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.8e-115 419.1 358 61.5
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.4e-114 417.2 352 62.5
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.9e-114 416.8 383 58.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-114 416.4 391 58.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 5.4e-114 415.2 391 58.1
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.4e-114 415.2 388 60.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 9.3e-114 414.5 353 62.0
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.5e-113 412.5 497 47.3
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 6.0e-113 411.8 359 60.4
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-112 411.0 389 57.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.9e-111 406.8 379 58.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.9e-111 406.8 384 59.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.5e-111 406.4 378 57.1
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 4.3e-111 405.6 362 55.2
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 5.6e-111 405.2 369 59.1
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-111 405.2 379 58.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-110 403.3 380 58.7
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.8e-109 400.2 363 59.5
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-108 396.4 386 57.3
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.6e-108 396.4 386 57.3
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 3.4e-108 396.0 347 60.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 5.8e-108 395.2 387 56.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 5.8e-108 395.2 387 56.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.9e-108 394.4 379 57.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.7e-107 393.7 290 60.3
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.9e-107 392.1 386 56.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.6e-105 385.6 287 68.6
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.3e-104 383.3 299 66.9
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.4e-101 374.0 285 61.8
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 2.4e-101 373.2 358 58.7
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 3.9e-96 355.9 360 52.8
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 4.8e-94 349.0 405 48.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 6.0e-89 332.0 251 66.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.5e-74 283.5 161 83.9
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.1e-57 227.3 286 42.3
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.2e-54 217.2 293 41.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 6.3e-54 215.7 171 64.9
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.6e-52 210.3 160 66.2
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.2e-49 201.4 258 45.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 7.2e-42 175.6 248 43.5
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-31 141.4 198 42.9
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-25 121.3 176 44.9
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 6.2e-25 119.4 72 70.8
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 3.4e-23 113.6 104 57.7
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 4.6e-20 103.2 279 28.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.1e-16 92.0 142 41.5
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 4.9e-14 83.2 56 69.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.9e-10 71.2 123 39.0


User provided reference genes

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