Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-68 262.7 142 100.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-40 169.5 231 51.9
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 9.4e-32 140.6 216 48.1
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.5e-29 133.3 210 46.2
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.8e-27 126.3 216 45.4
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.9e-26 121.3 147 51.7
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 8.8e-22 107.5 213 39.4
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 5.7e-21 104.8 210 37.6
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 9.8e-21 104.0 210 39.0
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.7e-20 103.2 210 39.5
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 3.7e-20 102.1 213 39.0
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.8e-20 101.7 207 36.7
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 4.8e-20 101.7 210 35.7
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.8e-19 99.8 209 37.8
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.1e-19 99.0 208 37.0
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.1e-19 98.6 211 37.0
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.4e-19 98.2 216 38.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 5.4e-19 98.2 212 37.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 1.2e-18 97.1 214 36.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.2e-18 97.1 212 37.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.6e-18 96.7 214 35.0
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-18 96.3 170 40.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.7e-18 95.9 208 37.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.5e-18 95.5 207 35.7
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 3.5e-18 95.5 191 35.6
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 5.9e-18 94.7 207 35.7
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.0e-17 94.0 207 36.7
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.7e-17 93.2 207 35.3
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 1.7e-17 93.2 203 35.0
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 2.3e-17 92.8 207 35.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.9e-17 92.4 204 34.8
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.9e-17 92.4 209 36.4
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 2.9e-17 92.4 208 38.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 3.8e-17 92.0 210 35.7
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 3.8e-17 92.0 209 35.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 3.8e-17 92.0 209 36.8
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.0e-17 91.7 194 38.1
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.0e-17 91.7 213 36.2
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 8.6e-17 90.9 210 38.1
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.1e-16 90.5 211 35.5
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.5e-16 90.1 208 36.1
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-16 90.1 213 36.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.5e-16 90.1 210 35.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.5e-16 90.1 195 37.9
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 2.5e-16 89.4 210 35.2
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.5e-16 89.4 210 33.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.5e-16 89.4 188 37.8
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-16 89.0 202 34.7
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.3e-16 89.0 202 34.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 3.3e-16 89.0 197 38.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.2e-16 88.6 210 35.2
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 4.2e-16 88.6 218 37.6
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 4.2e-16 88.6 226 35.0
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.5e-16 88.2 218 37.2
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 5.5e-16 88.2 215 36.3
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.5e-16 88.2 208 36.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 7.2e-16 87.8 216 37.0
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 7.2e-16 87.8 216 37.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 7.2e-16 87.8 206 35.9
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 7.2e-16 87.8 151 40.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 7.2e-16 87.8 210 33.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 9.5e-16 87.4 215 35.8
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 9.5e-16 87.4 188 36.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 9.5e-16 87.4 218 37.6
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-15 87.0 199 36.7
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.2e-15 87.0 218 37.6
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.1e-15 86.3 215 35.3
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.8e-15 85.9 211 33.6
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 2.8e-15 85.9 201 34.3
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 3.6e-15 85.5 207 35.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 4.7e-15 85.1 206 34.0
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 6.1e-15 84.7 214 33.6
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 6.1e-15 84.7 218 35.8
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 6.1e-15 84.7 194 36.1
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 6.1e-15 84.7 214 33.6
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 8.0e-15 84.3 211 36.0
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 8.0e-15 84.3 216 36.6
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 1.0e-14 84.0 87 54.0
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.0e-14 84.0 194 34.5
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.0e-14 84.0 212 34.0
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-14 83.6 88 56.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-14 83.6 88 56.8
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.4e-14 83.6 218 36.2
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.4e-14 83.6 211 36.0
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.8e-14 83.2 208 36.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 3.0e-14 82.4 211 33.6
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 3.0e-14 82.4 211 35.5
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.0e-14 82.0 211 33.2
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 4.0e-14 82.0 216 35.6
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 5.2e-14 81.6 103 49.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 5.2e-14 81.6 218 34.9
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 6.8e-14 81.3 186 34.9
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 6.8e-14 81.3 99 52.5
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 8.9e-14 80.9 208 34.6
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 8.9e-14 80.9 216 35.2
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 8.9e-14 80.9 211 34.1
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 1.2e-13 80.5 212 33.5
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.2e-13 80.5 210 33.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 1.5e-13 80.1 207 32.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.0e-13 79.7 205 35.1
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 7.5e-13 77.8 222 34.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 7.5e-13 77.8 222 34.2
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.7e-12 76.6 84 53.6
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.7e-12 76.6 83 48.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 2.8e-12 75.9 182 38.5
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.7e-12 75.5 209 34.0
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 8.3e-12 74.3 186 31.7
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.1e-11 73.9 84 54.8
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.4e-11 73.6 215 33.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.4e-11 73.6 84 54.8
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.4e-11 73.6 87 51.7
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 1.8e-11 73.2 75 54.7
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 3.1e-11 72.4 87 51.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.1e-11 72.0 204 30.4
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 5.4e-11 71.6 162 31.5
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 7.0e-11 71.2 81 49.4
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 7.0e-11 71.2 84 48.8
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 9.2e-11 70.9 158 33.5
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.7e-10 69.3 84 48.8
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.7e-10 69.3 84 47.6
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 5.9e-10 68.2 84 47.6
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-09 67.4 87 48.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.3e-09 67.0 113 38.1
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 2.9e-09 65.9 86 45.3
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.1e-08 63.9 32 100.0
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.9e-08 63.2 63 52.4
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.5e-08 62.8 144 34.0
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 7.3e-08 61.2 32 93.8
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 9.5e-08 60.8 144 32.6
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.6e-07 60.1 39 66.7
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 3.6e-07 58.9 38 68.4
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 6.1e-07 58.2 63 49.2
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 6.1e-07 58.2 41 68.3
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 8.0e-07 57.8 59 50.8
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.0e-06 57.4 77 45.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 2.3e-06 56.2 81 43.2
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 2.3e-06 56.2 37 67.6
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 3.0e-06 55.8 38 65.8


User provided reference genes

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