Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.5e-105 383.6 190 100.0
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 7.5e-93 344.0 190 86.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.8e-93 343.6 190 87.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 9.8e-93 343.6 190 87.9
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-91 339.3 190 86.3
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 4.7e-87 324.7 189 85.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-75 287.0 188 75.0
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-75 287.0 188 75.0
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 9.2e-75 283.9 179 74.9
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.2e-74 283.5 190 75.3
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.1e-74 282.7 180 75.6
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-74 282.7 177 75.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.7e-74 282.3 179 74.3
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 4.6e-74 281.6 190 74.7
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.3e-72 275.4 189 72.0
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.3e-72 275.0 181 73.5
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 4.3e-72 275.0 190 74.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 4.3e-72 275.0 180 72.2
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.6e-71 273.1 138 96.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.1e-71 272.7 177 75.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.8e-71 272.3 180 72.8
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 4.7e-71 271.6 184 71.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.7e-71 271.6 176 73.9
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.2e-71 271.2 189 70.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 6.2e-71 271.2 176 73.3
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 6.2e-71 271.2 180 73.3
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.1e-71 270.8 189 70.9
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.8e-70 269.6 170 75.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 3.1e-70 268.9 189 69.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 5.2e-70 268.1 163 77.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 6.8e-70 267.7 180 74.4
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 6.8e-70 267.7 180 72.2
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 6.8e-70 267.7 184 69.6
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 8.9e-70 267.3 184 71.2
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 8.9e-70 267.3 184 71.2
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.9e-70 267.3 183 72.1
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 8.9e-70 267.3 189 71.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.2e-69 266.9 180 72.2
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.2e-69 266.9 180 71.7
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.2e-69 266.9 179 73.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.5e-69 266.5 190 69.5
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.0e-69 266.2 190 73.2
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.4e-69 265.4 163 77.3
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.4e-69 265.0 173 76.9
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 4.4e-69 265.0 184 70.1
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 5.8e-69 264.6 191 70.2
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 5.8e-69 264.6 178 73.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.9e-69 263.8 184 70.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.9e-69 263.8 184 70.7
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 9.9e-69 263.8 184 70.1
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.3e-68 263.5 174 72.4
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.3e-68 263.5 190 66.3
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.3e-68 263.5 185 70.3
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.7e-68 263.1 184 69.6
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.7e-68 263.1 184 70.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-68 263.1 185 69.7
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-68 263.1 184 70.1
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.2e-68 262.7 184 70.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.9e-68 262.3 180 68.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.7e-68 261.9 163 81.0
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.7e-68 261.9 180 70.0
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.7e-68 261.9 184 70.7
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.9e-68 261.5 184 71.2
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.4e-68 261.2 184 71.2
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.4e-68 261.2 179 71.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 8.4e-68 260.8 171 74.3
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-67 260.0 184 71.2
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.9e-67 259.6 180 71.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.9e-67 259.6 165 79.4
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.9e-67 259.6 195 67.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.4e-67 259.2 188 68.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.4e-67 259.2 180 71.1
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-67 258.8 190 67.9
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 3.2e-67 258.8 190 67.9
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 3.2e-67 258.8 189 67.2
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 3.2e-67 258.8 189 67.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 3.2e-67 258.8 189 67.2
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 3.2e-67 258.8 184 67.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 4.1e-67 258.5 171 72.5
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.1e-67 258.5 187 69.5
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 4.1e-67 258.5 180 71.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 5.4e-67 258.1 184 67.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 7.1e-67 257.7 188 68.1
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 9.2e-67 257.3 182 70.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.2e-67 257.3 194 67.0
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.2e-66 256.9 183 69.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.2e-66 256.9 181 67.4
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.6e-66 256.5 184 67.4
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.6e-66 256.5 189 66.7
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.6e-66 256.5 184 67.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.7e-66 255.8 184 67.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 2.7e-66 255.8 183 66.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 3.5e-66 255.4 173 69.9
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 3.5e-66 255.4 184 67.4
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.5e-66 255.4 185 69.2
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 4.6e-66 255.0 183 67.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 5.1e-65 251.5 171 70.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 5.1e-65 251.5 185 67.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 8.6e-65 250.8 188 67.0
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 8.6e-65 250.8 184 66.8
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.1e-64 250.4 187 68.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.5e-64 250.0 163 74.2
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.5e-64 250.0 178 69.7
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.9e-64 249.6 184 66.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.9e-64 249.6 198 66.2
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.5e-64 249.2 183 67.2
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.5e-64 249.2 177 67.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.3e-64 248.4 184 67.9
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.3e-64 248.4 183 65.6
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 7.3e-64 247.7 181 66.9
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.1e-63 246.1 184 67.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.8e-62 243.0 196 63.3
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 4.0e-62 241.9 189 67.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 5.2e-62 241.5 185 65.9
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.2e-62 241.5 186 67.2
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 8.9e-62 240.7 181 65.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.5e-61 240.0 167 71.3
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.0e-61 239.6 192 64.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.6e-61 239.2 173 68.2
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 2.6e-61 239.2 176 67.0
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 3.4e-61 238.8 193 65.8
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.4e-61 238.4 171 69.6
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 4.4e-61 238.4 184 65.2
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.3e-60 236.9 185 65.4
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-60 236.9 185 63.8
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 2.2e-60 236.1 181 69.1
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-59 233.4 175 65.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-59 233.4 163 71.8
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-59 233.0 181 65.7
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.4e-59 232.6 219 57.5
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.2e-58 230.3 187 62.0
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.1e-58 229.6 276 48.9
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 4.6e-58 228.4 162 70.4
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 6.0e-58 228.0 170 65.3
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 1.3e-57 226.9 163 68.7
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.9e-56 223.0 183 61.2
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 5.6e-56 221.5 189 56.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 7.3e-56 221.1 189 57.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.1e-55 219.5 148 72.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 8.4e-52 207.6 155 62.6
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.6e-50 203.4 187 57.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.7e-49 199.9 134 73.9
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.3e-49 199.5 173 61.3
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.9e-49 198.7 132 71.2
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 8.1e-47 191.0 128 70.3
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 3.1e-46 189.1 213 50.7
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 3.1e-46 189.1 213 50.7
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 8.7e-41 171.0 171 52.6
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.6e-40 168.3 110 75.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.6e-39 166.8 125 66.4
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.0e-33 146.0 171 47.4
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.2e-27 125.6 117 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.4e-19 100.5 113 50.4
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.6e-18 95.5 73 58.9
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.4e-17 94.0 104 51.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 7.4e-16 88.2 159 34.6
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.4e-14 84.0 60 63.3
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 3.0e-09 66.2 49 67.3
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 5.1e-09 65.5 49 57.1


User provided reference genes

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