Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.2e-51 205.3 100 100.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.2e-19 99.0 57 75.4
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 3.8e-19 98.2 57 73.7
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.9e-18 95.9 57 73.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.9e-18 95.9 57 73.7
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.2e-18 95.1 57 70.2
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 4.2e-18 94.7 57 68.4
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 4.2e-18 94.7 57 70.2
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 7.1e-18 94.0 57 70.2
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 9.3e-18 93.6 57 70.2
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.6e-17 92.8 57 71.9
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 1.6e-17 92.8 57 71.9
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.6e-17 92.8 57 73.7
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.6e-17 92.8 57 70.2
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 2.7e-17 92.0 57 68.4
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.5e-17 91.7 57 70.2
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.6e-17 91.3 57 70.2
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 6.0e-17 90.9 57 70.2
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 6.0e-17 90.9 57 66.7
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.0e-16 90.1 57 64.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 1.8e-16 89.4 57 71.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.8e-16 89.4 57 64.9
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 1.8e-16 89.4 57 71.9
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.8e-16 89.4 57 63.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.3e-16 89.0 57 64.9
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 2.3e-16 89.0 57 64.9
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.0e-16 88.6 57 63.2
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 5.1e-16 87.8 57 63.2
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 5.1e-16 87.8 57 64.9
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 5.1e-16 87.8 57 63.2
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 6.7e-16 87.4 57 66.7
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 6.7e-16 87.4 57 64.9
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.7e-16 87.0 57 64.9
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.7e-16 87.0 57 64.9
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.7e-16 87.0 57 63.2
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 8.7e-16 87.0 57 64.9
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.9e-15 85.9 57 64.9
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.9e-15 85.9 57 63.2
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 64.9
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 64.9
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 61.4
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 63.2
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 61.4
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 2.5e-15 85.5 57 66.7
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 3.3e-15 85.1 57 61.4
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 3.3e-15 85.1 57 64.9
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 4.3e-15 84.7 57 63.2
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 4.3e-15 84.7 57 63.2
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 5.6e-15 84.3 57 59.6
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.6e-15 84.3 57 68.4
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.6e-15 84.3 57 68.4
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.4e-15 84.0 57 61.4
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 7.4e-15 84.0 57 61.4
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 9.6e-15 83.6 57 61.4
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.6e-14 82.8 57 61.4
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.6e-14 82.8 57 61.4
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 1.6e-14 82.8 63 57.1
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.1e-14 82.4 57 59.6
Peaxi162Scf00038g02542 Petunia axillaris HOM05D004945 ORTHO05D005536 2.1e-14 82.4 81 59.3
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.1e-14 82.4 57 57.9
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.7e-14 81.6 57 61.4
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 4.8e-14 81.3 57 59.6
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 4.8e-14 81.3 57 63.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 4.8e-14 81.3 57 57.9
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 6.2e-14 80.9 57 61.4
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 6.2e-14 80.9 57 63.2
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 8.1e-14 80.5 57 57.9
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.1e-13 80.1 57 59.6
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.1e-13 80.1 57 59.6
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.4e-13 79.7 57 63.2
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.4e-13 79.7 57 59.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.4e-13 79.7 57 61.4
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-13 79.3 57 57.9
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-13 79.3 57 57.9
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.8e-13 79.3 64 53.1
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.8e-13 79.3 57 57.9
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 1.8e-13 79.3 57 57.9
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.2e-12 76.6 54 59.3
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.5e-12 76.3 57 56.1
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 2.0e-12 75.9 57 56.1
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.0e-12 75.9 57 59.6
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.6e-12 75.5 57 59.6
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 3.4e-12 75.1 57 57.9
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 4.5e-12 74.7 57 54.4
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 4.5e-12 74.7 57 59.6
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 1.0e-11 73.6 57 59.6
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.0e-11 73.6 54 53.7
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 1.0e-11 73.6 57 54.4
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.3e-11 73.2 57 59.6
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 1.3e-11 73.2 57 54.4
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.7e-11 72.8 57 54.4
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.7e-11 72.8 57 59.6
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.7e-11 72.8 57 57.9
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 52.6
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 57.9
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 57.9
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 57.9
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 57.9
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 57.9
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 2.2e-11 72.4 44 68.2
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 2.2e-11 72.4 45 68.9
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 56.1
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 2.2e-11 72.4 57 56.1
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 2.9e-11 72.0 57 59.6
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 2.9e-11 72.0 57 50.9
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 4.9e-11 71.2 57 56.1
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 4.9e-11 71.2 57 57.9
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 4.9e-11 71.2 56 55.4
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 6.5e-11 70.9 57 57.9
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 8.4e-11 70.5 57 49.1
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 8.4e-11 70.5 57 57.9
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.1e-10 70.1 54 51.9
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 57.9
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 57.9
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 57.9
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 57.9
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 50.9
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 50.9
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 50.9
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 50.9
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 1.4e-10 69.7 57 49.1
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.5e-10 68.9 57 50.9
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 2.5e-10 68.9 57 56.1
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 5.5e-10 67.8 56 57.1
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 9.3e-10 67.0 57 54.4
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.5e-09 65.1 57 47.4
Nitab4.5_0001691g0180 Nicotiana tabacum HOM05D004945 ORTHO05D286153 1.1e-07 60.1 29 96.6
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 1.6e-06 56.2 43 51.2
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 1.6e-06 56.2 43 51.2
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 8.2e-06 53.9 31 64.5
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.2e-06 53.9 57 43.9


User provided reference genes

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