Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.0e-224 783.1 394 100.0
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.0e-165 585.1 393 79.6
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 8.1e-158 560.8 394 76.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.1e-154 550.4 385 76.6
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.6e-153 546.6 385 76.1
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.7e-153 545.8 385 75.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 7.8e-153 544.3 394 74.6
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-130 470.3 394 64.5
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.7e-129 466.1 394 63.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.9e-127 459.9 416 60.3
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 6.9e-125 451.4 388 62.6
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.7e-121 439.5 392 60.2
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.1e-121 438.3 392 61.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 3.0e-120 436.0 388 61.6
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 3.0e-120 436.0 392 59.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.5e-119 433.7 390 59.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.9e-119 433.3 392 59.2
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.3e-118 430.6 392 58.4
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.8e-118 429.5 389 60.4
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 8.2e-118 427.9 394 59.9
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 8.2e-118 427.9 388 59.0
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.8e-117 426.8 394 58.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.8e-117 426.8 418 58.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.8e-117 426.8 391 59.3
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.4e-117 426.4 394 58.9
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 5.3e-117 425.2 396 59.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.3e-117 425.2 389 58.4
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 6.9e-117 424.9 388 60.1
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 9.1e-117 424.5 390 59.5
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.6e-116 422.9 395 58.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 2.6e-116 422.9 388 57.7
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 7.7e-116 421.4 394 58.6
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-115 421.0 378 60.8
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.0e-115 421.0 393 59.3
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.7e-115 420.2 373 60.6
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.2e-115 419.9 303 71.3
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 3.8e-115 419.1 392 57.9
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 9.4e-114 414.5 378 59.8
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 9.4e-114 414.5 389 57.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 1.6e-113 413.7 392 57.1
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 1.6e-113 413.7 388 56.7
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 4.7e-113 412.1 393 58.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.0e-112 411.0 392 57.7
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.8e-112 410.2 392 57.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 2.3e-112 409.8 390 57.2
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.0e-112 409.5 391 56.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.1e-112 408.7 392 55.4
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 5.1e-112 408.7 388 56.2
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 5.1e-112 408.7 393 57.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 6.7e-112 408.3 388 56.4
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.1e-111 407.5 392 57.1
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 7.4e-111 404.8 393 55.5
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 9.7e-111 404.4 373 59.5
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 6.3e-110 401.7 378 57.7
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 8.2e-110 401.4 373 59.0
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.4e-109 400.6 376 58.5
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 4.1e-109 399.1 388 57.0
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 5.3e-109 398.7 376 59.0
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 5.3e-109 398.7 391 54.7
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 6.9e-109 398.3 380 58.2
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.9e-109 398.3 394 56.3
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.0e-108 396.7 389 55.5
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 2.0e-108 396.7 392 54.6
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.6e-108 396.4 303 67.3
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 7.7e-108 394.8 391 54.5
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-107 394.4 377 56.2
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.0e-107 394.4 391 54.5
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.0e-107 394.4 390 53.8
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.3e-107 394.0 392 53.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.3e-107 394.0 384 54.9
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.3e-107 394.0 409 54.8
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.1e-106 391.0 301 68.4
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.9e-106 390.2 390 53.6
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-106 389.8 407 52.8
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.5e-106 389.8 390 55.9
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 3.2e-106 389.4 418 52.9
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 7.2e-106 388.3 392 53.6
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 7.2e-106 388.3 376 58.5
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 1.2e-105 387.5 391 53.7
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.6e-105 387.1 381 54.9
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 4.7e-105 385.6 388 55.4
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.0e-104 384.4 378 55.0
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 2.3e-104 383.3 388 53.9
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 2.3e-104 383.3 375 54.4
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.3e-104 383.3 391 54.5
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 3.0e-104 382.9 385 53.8
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.5e-103 380.6 375 55.5
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.5e-103 380.6 388 53.1
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.0e-103 380.2 388 55.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 2.0e-103 380.2 308 64.3
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.4e-103 379.0 389 55.5
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.7e-103 378.6 323 61.0
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 9.7e-103 377.9 375 54.7
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.2e-102 376.7 385 53.5
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 3.7e-102 375.9 318 61.3
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.8e-102 375.6 375 54.4
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 2.4e-101 373.2 309 61.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.4e-101 373.2 375 54.1
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.0e-101 371.7 392 53.8
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.1e-101 371.3 391 51.9
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.2e-100 370.9 404 51.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 3.5e-100 369.4 313 60.4
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.9e-100 368.6 373 53.6
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.7e-99 367.1 375 54.1
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.9e-99 366.3 373 53.9
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-98 364.0 322 59.0
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.5e-98 363.2 293 66.9
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 3.6e-97 359.4 370 52.7
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.0e-96 357.8 375 53.3
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.2e-96 355.5 388 52.8
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.4e-93 347.4 392 50.3
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 5.3e-93 345.5 371 51.8
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.2e-91 340.1 378 48.9
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.5e-90 337.4 378 49.2
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 9.4e-90 334.7 327 54.4
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 6.1e-89 332.0 394 49.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.6e-87 326.6 383 49.9
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.1e-85 319.7 229 69.4
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 7.0e-85 318.5 389 47.6
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.2e-84 317.8 315 54.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 1.0e-83 314.7 373 47.5
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 5.0e-83 312.4 311 53.4
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-80 304.3 217 69.6
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-80 303.9 234 64.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 8.9e-80 301.6 192 80.7
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.8e-78 296.6 219 69.4
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.1e-77 293.1 491 40.7
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 4.1e-77 292.7 378 47.6
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 7.5e-71 271.9 221 63.3
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 4.6e-68 262.7 219 63.0
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.9e-66 257.3 172 76.7
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.3e-64 250.4 186 67.7
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.0e-64 249.6 208 62.0
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.4e-63 246.5 214 61.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.4e-63 246.5 315 47.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.1e-61 239.6 309 46.0
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 9.2e-61 238.4 215 60.5
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 4.7e-57 226.1 171 67.8
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.4e-55 219.9 302 45.0
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.7e-54 217.6 148 73.0
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.7e-54 216.5 187 59.9
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.1e-52 210.7 334 40.1
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 6.0e-52 209.1 287 43.2
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 6.0e-52 209.1 140 76.4
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-51 207.6 132 78.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 5.1e-51 206.1 246 50.4
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.6e-49 201.1 262 43.9
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.1e-48 198.4 319 38.9
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 3.1e-48 196.8 196 54.6
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.0e-48 196.4 151 64.9
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.4e-47 193.4 252 43.7
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.2e-39 168.3 317 41.0
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.2e-38 164.1 151 59.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.0e-35 153.7 182 48.4
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 6.9e-32 142.5 204 41.2
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 6.4e-30 136.0 106 67.0
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 3.2e-29 133.7 186 42.5
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 4.2e-29 133.3 185 42.7
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.1e-26 125.2 222 34.7
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.5e-26 124.0 112 58.0
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.5e-23 114.8 178 38.2
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.7e-22 111.3 145 48.3
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.5e-21 106.3 83 63.9
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 3.5e-20 103.6 83 65.1
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.1e-17 94.4 185 35.1
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.1e-16 92.0 97 52.6
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-15 87.4 65 66.2
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 1.7e-14 84.7 85 52.9
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-14 84.7 65 66.2
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.9e-14 84.0 105 48.6
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.9e-13 81.3 90 50.0
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.2e-12 78.6 46 80.4
Gohir.D02G117850 Gossypium hirsutum HOM05D034602 ORTHO05D048040 2.2e-06 57.8 36 72.2
arahy.Tifrunner.gnm1.ann1.IKUR0B Arachis hypogaea HOM05D003898 ORTHO05D086768 2.9e-06 57.4 73 47.9


User provided reference genes

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