Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 0.0e+00 1478.4 740 100.0
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 0.0e+00 1169.1 766 79.4
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 0.0e+00 1165.2 791 77.0
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 0.0e+00 1164.1 766 79.0
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 0.0e+00 1139.4 740 81.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 0.0e+00 1137.9 751 78.4
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.2e-268 929.9 767 61.1
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 8.1e-268 927.2 766 62.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 7.6e-266 920.6 767 61.3
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.9e-264 916.0 765 62.0
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 7.1e-264 914.1 595 79.0
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 7.8e-263 910.6 765 61.3
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 2.3e-262 909.1 767 61.8
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 3.9e-262 908.3 766 60.8
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 1.5e-261 906.4 765 61.6
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.2e-260 903.3 765 61.7
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.2e-260 903.3 765 61.0
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 1.8e-259 899.4 765 60.9
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 5.2e-259 897.9 767 60.6
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 9.0e-259 897.1 773 60.8
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.5e-258 896.3 768 61.1
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 2.2e-257 892.5 767 59.5
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 4.9e-257 891.3 765 59.5
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 6.4e-257 891.0 802 58.1
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 2.4e-256 889.0 765 59.6
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 3.2e-256 888.6 765 59.5
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 4.2e-256 888.3 767 59.5
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.6e-254 880.9 766 60.4
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.3e-253 877.5 769 58.9
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 8.1e-252 874.0 775 58.5
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 1.1e-251 873.6 769 58.5
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.4e-251 873.2 684 65.9
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.8e-251 872.8 769 59.3
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 4.9e-249 864.8 760 59.2
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 7.4e-245 850.9 766 58.9
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 8.1e-244 847.4 811 56.5
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 4.5e-242 841.6 796 56.4
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 9.9e-242 840.5 768 57.4
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 9.9e-242 840.5 774 57.1
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.2e-241 839.3 767 57.4
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 2.9e-241 839.0 829 55.0
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 2.9e-241 839.0 766 57.0
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 4.9e-241 838.2 767 58.0
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.9e-240 836.3 766 57.0
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.4e-240 835.9 766 58.9
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 5.5e-240 834.7 769 57.3
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 7.1e-240 834.3 770 56.9
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 1.2e-239 833.6 770 57.5
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.7e-239 832.4 767 55.9
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.0e-239 831.2 785 55.7
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.0e-239 831.2 787 55.8
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 1.8e-238 829.7 767 57.6
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.9e-238 828.6 788 55.5
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 3.9e-238 828.6 766 57.0
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.5e-237 826.6 776 56.6
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.3e-236 823.5 769 56.7
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.8e-235 819.7 770 56.2
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 5.3e-235 818.1 771 56.5
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.6e-234 815.8 687 61.6
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.6e-234 815.8 767 56.2
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 3.4e-234 815.5 771 55.8
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.7e-233 813.1 762 56.3
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 8.4e-233 810.8 763 55.8
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 2.5e-232 809.3 768 56.6
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 9.3e-232 807.4 768 55.6
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.1e-231 806.2 784 55.0
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 3.5e-231 805.4 768 55.6
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 4.6e-231 805.1 767 55.8
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 4.6e-231 805.1 770 56.6
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 6.0e-231 804.7 767 56.3
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 3.0e-230 802.4 763 55.2
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 8.7e-230 800.8 771 55.8
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 4.3e-229 798.5 766 55.9
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.1e-227 793.9 768 55.9
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 1.4e-227 793.5 698 59.7
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 9.0e-227 790.8 768 55.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 9.0e-227 790.8 768 55.7
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 7.6e-226 787.7 776 54.1
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 1.3e-225 786.9 665 61.5
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 1.7e-225 786.6 771 55.3
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 1.7e-225 786.6 769 55.5
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.7e-225 786.6 766 54.8
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.9e-225 785.8 659 60.4
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 2.7e-223 779.2 627 64.9
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.8e-222 776.5 771 54.2
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 3.9e-222 775.4 752 55.9
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 9.7e-221 770.8 780 54.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 2.2e-220 769.6 666 59.6
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 2.4e-219 766.1 845 50.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.5e-218 761.9 765 53.7
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 7.9e-215 751.1 669 57.5
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 2.3e-214 749.6 770 53.0
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 2.0e-210 736.5 720 56.8
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 6.1e-207 724.9 589 65.5
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 9.7e-205 717.6 778 51.0
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 1.4e-203 713.8 768 51.3
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 2.6e-202 709.5 774 50.8
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.3e-201 707.2 667 56.1
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 8.2e-196 688.0 787 49.6
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 8.5e-193 677.9 665 54.1
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.5e-192 677.2 749 48.7
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.8e-185 652.5 758 49.1
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.4e-182 644.0 747 49.1
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.0e-182 642.5 770 48.2
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.5e-178 629.0 644 53.7
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.1e-166 591.3 928 40.3
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 2.3e-161 573.5 649 50.1
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.3e-153 547.7 640 49.5
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 5.2e-150 535.8 775 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 2.6e-149 533.5 802 42.5
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.3e-148 531.2 568 51.2
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 8.7e-145 518.5 770 42.2
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.8e-140 503.1 518 51.0
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.6e-138 496.1 575 50.3
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 3.9e-137 493.0 633 45.7
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 2.0e-133 480.7 615 45.9
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.9e-116 422.9 415 54.5
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.7e-112 409.5 406 52.5
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.3e-103 379.4 340 62.1
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 3.6e-82 310.5 642 33.0
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.6e-61 241.9 574 31.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.6e-61 241.9 375 40.5
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.0e-57 229.2 252 48.8
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.0e-50 203.0 215 49.8
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 8.0e-50 203.0 215 49.8
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.7e-47 194.1 146 64.4
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 7.8e-45 186.4 210 52.9
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 1.3e-44 185.7 543 30.8
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 4.3e-43 180.6 108 82.4
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 4.0e-41 174.1 193 44.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 1.9e-35 155.2 79 92.4
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 4.7e-34 150.6 78 89.7
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 1.2e-32 146.0 122 61.5
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 1.2e-32 146.0 79 82.3
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 2.4e-30 138.3 177 43.5
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.5e-24 119.0 65 87.7
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 4.6e-21 107.5 56 85.7
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 3.2e-14 84.7 50 72.0
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.2e-14 84.3 77 50.6
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 1.1e-11 76.3 61 67.2
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 3.1e-09 68.2 191 30.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.0e-09 66.6 66 43.9
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.5e-08 65.9 66 45.5
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 5.8e-08 63.9 58 53.4
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 4.9e-07 60.8 70 47.1


User provided reference genes

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