Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006737g0060 Nicotiana tabacum HOM05D000283 ORTHO05D006673 0.0e+00 2437.1 1267 100.0
Nitab4.5_0007221g0010 Nicotiana tabacum HOM05D000283 ORTHO05D006673 0.0e+00 2260.0 1268 94.3
Peaxi162Scf00135g00027 Petunia axillaris HOM05D000283 ORTHO05D006673 0.0e+00 1791.2 1286 76.2
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 0.0e+00 1663.3 1254 73.3
Sopen04g005360 Solanum pennellii HOM05D000283 ORTHO05D006673 0.0e+00 1570.4 1252 71.0
PGSC0003DMG400011491 Solanum tuberosum HOM05D000283 ORTHO05D006673 0.0e+00 1240.3 1040 69.3
Solyc04g010185.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 0.0e+00 1109.4 857 71.4
Sopen04g005270 Solanum pennellii HOM05D000283 ORTHO05D006673 8.7e-312 1073.9 1231 56.0
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 4.5e-242 842.4 1335 43.9
PGSC0003DMG400011487 Solanum tuberosum HOM05D000283 ORTHO05D006673 8.2e-220 768.5 1118 48.5
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 5.9e-202 709.1 1340 40.7
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 1.2e-199 701.4 1340 40.4
Cc02_g08660 Coffea canephora HOM05D000283 ORTHO05D006673 8.6e-169 599.0 1277 39.4
Rhsim09G0155800 Rhododendron simsii HOM05D000283 ORTHO05D006673 5.4e-163 579.7 1352 38.1
PGSC0003DMG400011471 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.6e-160 568.9 1075 41.9
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 3.8e-156 557.0 1315 35.1
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 3.5e-154 550.4 1321 37.5
Hma1.2p1_0348F.1_g131680 Hydrangea macrophylla HOM05D000283 ORTHO05D006673 1.3e-153 548.5 1334 36.1
MSTRG.8954 Avicennia marina HOM05D000283 ORTHO05D006673 8.7e-153 545.8 1312 36.8
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 6.9e-150 536.2 1316 36.3
MSTRG.27328 Avicennia marina HOM05D000283 ORTHO05D006673 2.0e-149 534.6 1318 36.6
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.4e-147 526.6 1217 35.9
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.7e-140 505.0 1369 34.6
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.4e-139 501.9 1220 35.7
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 2.1e-138 498.0 1323 34.9
Migut.F00680 Erythranthe guttata HOM05D000283 ORTHO05D006673 3.1e-134 484.2 1291 35.9
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 7.6e-133 479.6 1282 34.6
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 2.9e-132 477.6 1189 36.1
PGSC0003DMG400011484 Solanum tuberosum HOM05D000283 ORTHO05D006673 4.6e-130 470.3 934 41.4
Atru.chr12.593 Acer truncatum HOM05D000283 ORTHO05D006673 6.7e-129 466.5 1268 34.4
Prupe.2G224500 Prunus persica HOM05D000283 ORTHO05D006673 1.6e-127 461.8 1327 34.4
COL.COLO4_29238 Corchorus olitorius HOM05D000283 ORTHO05D006673 7.9e-122 443.0 1281 32.9
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 1.9e-120 438.3 1398 32.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 2.8e-119 434.5 1395 32.3
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 9.1e-118 429.5 1275 33.6
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.4e-117 427.6 1186 33.7
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 7.7e-117 426.4 1367 31.8
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.2e-115 421.0 1391 33.1
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 7.9e-114 416.4 1375 32.7
PGSC0003DMG400011472 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.5e-112 412.1 959 36.5
Oeu025162.3 Olea europaea HOM05D000283 ORTHO05D006673 7.4e-112 409.8 1159 34.7
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.7e-111 408.7 1284 32.4
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.8e-110 405.2 1380 32.2
Psat6g238520 Pisum sativum HOM05D000283 ORTHO05D006673 4.1e-110 404.1 1254 34.5
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 2.6e-109 401.4 1382 32.4
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 4.5e-109 400.6 1390 32.5
TPR.G10427 Trifolium pratense HOM05D000283 ORTHO05D006673 1.0e-108 399.4 1347 33.5
Manes.10G039300 Manihot esculenta HOM05D000283 ORTHO05D006673 1.9e-107 395.2 1280 32.7
TWI38G0559 Tripterygium wilfordii HOM05D000283 ORTHO05D006673 5.5e-107 393.7 1341 32.2
Sopen04g005330 Solanum pennellii HOM05D000283 ORTHO05D006673 4.7e-106 390.6 928 37.0
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 6.1e-106 390.2 1271 32.3
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 1.8e-105 388.7 1324 32.3
MD07G1184600 Malus domestica HOM05D000283 ORTHO05D006673 2.3e-105 388.3 1303 33.0
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 4.4e-104 384.0 1095 34.5
Manes.10G039200 Manihot esculenta HOM05D000283 ORTHO05D006673 1.1e-102 379.4 1308 32.2
MD01G1117200 Malus domestica HOM05D000283 ORTHO05D006673 1.4e-102 379.0 1295 32.8
Potri.010G213800 Populus trichocarpa HOM05D000283 ORTHO05D006673 4.1e-102 377.5 1340 32.4
Sopen04g005310 Solanum pennellii HOM05D000283 ORTHO05D006673 1.6e-101 375.6 1081 34.0
Sabra10G0165500 Salix brachista HOM05D000283 ORTHO05D006673 5.0e-100 370.5 1325 31.6
PGSC0003DMG400011488 Solanum tuberosum HOM05D000283 ORTHO05D006673 9.4e-99 366.3 581 45.8
Sopen04g005350 Solanum pennellii HOM05D000283 ORTHO05D006673 1.4e-97 362.5 910 37.5
Potri.008G047600 Populus trichocarpa HOM05D000283 ORTHO05D006673 3.3e-96 357.8 1325 30.7
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 2.2e-95 355.1 1230 31.0
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.8e-95 354.8 1354 30.5
Solyc04g010155.2 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.2e-93 349.4 674 42.0
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 7.7e-93 346.7 1322 30.8
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 7.2e-91 340.1 1321 31.0
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 9.4e-91 339.7 1334 30.8
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 1.6e-90 339.0 1335 30.9
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 6.8e-89 333.6 1319 30.4
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.5e-88 332.4 1335 30.6
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 1.5e-88 332.4 1217 30.6
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.8e-87 328.2 1421 30.0
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 1.2e-82 312.8 1342 29.7
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 1.2e-80 306.2 530 39.1
Sopen03g020140 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-76 290.8 349 54.2
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 2.8e-74 285.0 703 37.1
CANSAT56G3782 Cannabis sativa HOM05D000283 ORTHO05D006673 4.9e-71 274.2 1346 29.3
Eucgr.G02778 Eucalyptus grandis HOM05D000283 ORTHO05D006673 1.3e-68 266.2 1252 28.4
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 8.6e-68 263.5 1290 28.6
DCAR_020267 Daucus carota HOM05D000457 ORTHO05D000560 1.2e-64 253.1 1109 30.2
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 9.2e-62 243.4 1283 27.7
Solyc04g010180.4 Solanum lycopersicum HOM05D000283 ORTHO05D006673 2.0e-61 242.3 166 75.9
DCAR_010662 Daucus carota HOM05D000283 ORTHO05D006673 7.8e-61 240.4 1326 28.2
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 2.5e-59 235.3 252 52.0
THA.LOC104799366 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 2.9e-55 221.9 1283 28.4
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 3.3e-51 208.4 1357 25.5
THA.LOC104809887 Tarenaya hassleriana HOM05D000283 ORTHO05D006673 5.6e-51 207.6 1205 29.0
Actinidia29198 Actinidia chinensis HOM05D000283 ORTHO05D006673 3.6e-50 204.9 658 34.3
PGSC0003DMG400042471 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.8e-49 200.7 180 63.9
CAN.G786.35 Capsicum annuum HOM05D000283 ORTHO05D006673 1.1e-43 183.3 142 70.4
SGA_v2.0_scaffold60G20995 Striga asiatica HOM05D000283 ORTHO05D006673 2.1e-42 179.1 1312 26.8
ClCG09G020330 Citrullus lanatus HOM05D000283 ORTHO05D006673 4.4e-40 171.4 673 30.3
Sed0006338 Sechium edule HOM05D000283 ORTHO05D006673 3.8e-39 168.3 670 30.4
PGSC0003DMG400039757 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.8e-39 168.3 167 59.3
Cpa.g.sc1.301 Carica papaya HOM05D000283 ORTHO05D006673 2.4e-38 165.6 886 29.1
PGSC0003DMG400011503 Solanum tuberosum HOM05D000283 ORTHO05D006673 1.3e-36 159.8 182 54.9
Haze_16971 Corylus avellana HOM05D000283 ORTHO05D006673 3.3e-35 155.2 727 27.5
Sp6g30440 Schrenkiella parvula HOM05D010678 ORTHO05D006673 1.3e-34 153.3 1140 26.8
Sed0026677 Sechium edule HOM05D000283 ORTHO05D006673 2.1e-34 152.5 674 29.7
AL6G24200 Arabidopsis lyrata HOM05D010678 ORTHO05D006673 2.4e-33 149.1 1328 26.3
Sopen04g005300 Solanum pennellii HOM05D000283 ORTHO05D006673 3.1e-33 148.7 118 66.1
MELO3C025491.2 Cucumis melo HOM05D000283 ORTHO05D006673 1.7e-31 142.9 679 28.6
MELO3C025488.2 Cucumis melo HOM05D000283 ORTHO05D006673 8.4e-31 140.6 668 27.2
Sopen04g005290 Solanum pennellii HOM05D000312 ORTHO05D000221 1.1e-30 140.2 721 28.0
CDE07G1705 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 3.0e-28 132.1 1351 25.8
AT5G13590 Arabidopsis thaliana HOM05D010678 ORTHO05D006673 5.1e-28 131.3 1318 25.9
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 5.1e-28 131.3 681 27.6
CARHR199850 Cardamine hirsuta HOM05D010678 ORTHO05D006673 9.6e-27 127.1 520 31.0
Thhalv10012490m.g Eutrema salsugineum HOM05D010678 ORTHO05D006673 2.1e-26 125.9 1273 25.8
Carub.0006s1175 Capsella rubella HOM05D010678 ORTHO05D006673 2.8e-26 125.6 1291 25.9
CsaV3_5G026100 Cucumis sativus L. HOM05D000283 ORTHO05D006673 2.9e-23 115.5 369 31.4
PGSC0003DMG400037112 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.8e-23 115.2 208 42.8
PGSC0003DMG400011490 Solanum tuberosum HOM05D000283 ORTHO05D006673 6.4e-23 114.4 160 50.0
MELO3C025492.2 Cucumis melo HOM05D000283 ORTHO05D006673 3.5e-21 108.6 632 25.9
CDE04G2023 Ceratophyllum demersum HOM05D000283 ORTHO05D006673 1.5e-19 103.2 1330 23.8
Oeu025164.1 Olea europaea HOM05D000283 ORTHO05D010811 1.5e-16 93.2 316 31.3
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.7e-15 89.7 1446 24.6
Sopen04g005280 Solanum pennellii HOM05D000283 ORTHO05D006673 3.2e-14 85.5 89 59.6
Oeu025165.1 Olea europaea HOM05D008194 ORTHO05D010811 7.1e-14 84.3 254 34.6
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 1.8e-12 79.7 1178 24.4
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.5e-11 76.6 543 26.9
BcaNung01899 Brassica carinata HOM05D010678 ORTHO05D006673 4.3e-11 75.1 1301 24.1
Solyc04g010130.1 Solanum lycopersicum HOM05D000283 ORTHO05D006673 1.3e-10 73.6 91 47.3
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 6.3e-10 71.2 762 25.7
SGA_v2.0_scaffold44G16697 Striga asiatica HOM05D000283 ORTHO05D006673 1.1e-09 70.5 245 32.2
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.8e-09 69.7 1436 23.0
SGA_v2.0_scaffold44G16695 Striga asiatica HOM05D000283 ORTHO05D006673 4.1e-09 68.6 1249 23.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 5.0e-07 61.6 774 25.2


User provided reference genes

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