Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.1e-93 346.7 174 100.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.9e-90 335.9 174 96.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 3.3e-79 298.5 174 86.8
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.3e-77 291.2 174 85.1
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.9e-75 284.6 174 83.9
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.7e-73 278.9 174 83.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 6.0e-73 277.7 174 82.2
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.4e-68 261.9 174 76.4
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 3.7e-54 215.3 176 63.1
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.8e-51 205.3 192 60.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.9e-50 203.0 190 58.4
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 7.2e-50 201.1 178 60.1
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 9.4e-50 200.7 190 57.9
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.2e-49 200.3 178 60.7
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.6e-49 199.9 177 59.9
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.7e-49 199.1 176 60.2
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 6.1e-49 198.0 184 57.6
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.0e-48 197.2 181 59.7
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.8e-48 196.4 189 57.7
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 5.2e-48 194.9 176 59.1
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.2e-48 194.9 189 56.6
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.1e-47 193.7 178 56.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.4e-47 191.8 176 56.8
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 4.4e-47 191.8 178 57.9
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 5.7e-47 191.4 191 56.0
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 9.7e-47 190.7 187 56.1
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 9.7e-47 190.7 189 57.1
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 4.8e-46 188.3 187 55.6
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 4.8e-46 188.3 190 55.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 6.3e-46 188.0 178 56.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 6.3e-46 188.0 184 56.5
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 8.2e-46 187.6 174 56.3
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 8.2e-46 187.6 188 56.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.1e-45 187.2 178 56.7
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.4e-45 186.8 192 54.2
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 1.4e-45 186.8 187 55.6
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 1.8e-45 186.4 182 55.5
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 2.4e-45 186.0 178 56.7
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 3.1e-45 185.7 175 57.7
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 3.1e-45 185.7 183 56.8
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 4.1e-45 185.3 176 55.7
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.3e-45 184.9 191 53.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 5.3e-45 184.9 191 53.9
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 5.3e-45 184.9 176 56.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 7.0e-45 184.5 189 54.5
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-44 183.3 191 53.4
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 4.5e-44 181.8 193 53.4
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.7e-44 181.0 189 54.5
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.7e-43 179.9 184 57.6
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.2e-43 179.5 196 52.0
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.2e-43 179.5 181 51.9
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.9e-43 179.1 187 55.6
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 5.0e-43 178.3 184 57.1
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 5.0e-43 178.3 193 50.8
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 8.5e-43 177.6 190 53.2
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.5e-43 177.6 184 56.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.1e-42 177.2 196 52.6
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.5e-42 176.8 182 52.7
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 1.9e-42 176.4 187 55.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.5e-42 176.0 193 52.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.5e-42 176.0 185 53.5
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.5e-42 176.0 184 57.1
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.2e-42 175.6 196 51.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 4.2e-42 175.3 199 52.8
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-42 175.3 188 55.9
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 7.2e-42 174.5 183 53.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 9.4e-42 174.1 190 52.1
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 9.4e-42 174.1 186 51.1
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-41 173.7 189 50.8
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.6e-41 173.3 191 53.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-41 172.9 190 55.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.7e-41 172.6 176 56.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 3.6e-41 172.2 188 53.2
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.7e-41 171.8 192 52.6
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 4.7e-41 171.8 183 54.6
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.7e-41 171.8 175 56.6
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.1e-41 171.4 184 53.3
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 8.0e-41 171.0 187 52.9
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-40 170.6 191 54.5
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 1.4e-40 170.2 180 55.0
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.4e-40 170.2 174 54.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.8e-40 169.9 193 48.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.8e-40 169.9 196 51.5
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 3.0e-40 169.1 177 53.7
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 4.0e-40 168.7 179 53.6
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.2e-40 168.3 176 53.4
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 6.7e-40 167.9 191 51.3
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 8.8e-40 167.5 152 58.6
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.2e-39 167.2 197 50.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.6e-39 166.0 182 52.7
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 2.6e-39 166.0 176 54.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.6e-39 166.0 195 49.7
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 5.7e-39 164.9 182 52.7
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.7e-39 164.9 177 52.5
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.8e-38 162.5 177 50.8
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 2.8e-38 162.5 177 52.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 4.8e-38 161.8 175 53.1
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.8e-37 159.8 134 64.9
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 4.1e-37 158.7 181 53.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.1e-37 158.7 181 50.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.6e-36 156.8 176 52.3
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 5.9e-36 154.8 179 51.4
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 5.9e-36 154.8 180 50.0
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 5.9e-36 154.8 191 48.2
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.2e-35 152.9 182 50.5
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.2e-35 152.9 195 49.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.9e-34 149.8 191 51.3
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 1.9e-34 149.8 139 59.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 4.2e-34 148.7 128 62.5
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 4.2e-34 148.7 128 62.5
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 5.5e-34 148.3 118 66.1
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 5.5e-34 148.3 120 65.0
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.2e-33 147.1 176 48.9
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 6.8e-32 141.4 158 53.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.7e-30 136.7 117 59.0
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 7.0e-29 131.3 111 65.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.0e-28 129.8 178 45.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.3e-27 127.1 172 50.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 8.0e-25 117.9 187 41.2
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 6.8e-24 114.8 177 44.1
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.2e-23 114.0 177 42.9
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.2e-23 114.0 177 42.9
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.8e-23 110.9 185 42.2
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.8e-21 106.7 118 50.8
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-19 100.5 82 62.2
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.5e-18 97.1 148 47.3
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.3e-18 95.9 101 48.5
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 4.3e-18 95.5 130 47.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 3.6e-17 92.4 191 36.1
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 2.2e-14 83.2 191 35.6
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.8e-13 80.1 101 47.5
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.2e-13 79.3 140 44.3
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 5.0e-11 72.0 130 40.8
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.3e-10 69.3 142 37.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 1.4e-08 63.9 147 32.0
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.2e-07 60.8 58 53.4
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-06 57.4 83 45.8


User provided reference genes

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