Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 0.0e+00 1304.3 645 100.0
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 0.0e+00 1245.7 645 95.5
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 0.0e+00 1165.2 645 88.2
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 0.0e+00 1157.5 645 87.1
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 0.0e+00 1156.7 648 87.0
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 0.0e+00 1147.5 645 87.8
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 0.0e+00 1141.7 644 87.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 9.8e-262 906.7 653 67.7
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 5.4e-260 901.0 653 67.7
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 5.2e-255 884.4 651 69.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 3.8e-253 878.2 653 67.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 3.0e-250 868.6 657 66.2
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 5.2e-247 857.8 650 64.5
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 7.6e-246 854.0 655 64.9
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 4.9e-245 851.3 652 64.9
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 8.4e-245 850.5 653 65.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 8.4e-245 850.5 659 65.1
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 2.3e-242 842.4 647 64.3
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 5.1e-242 841.3 651 64.5
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 5.6e-241 837.8 653 64.8
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-240 836.3 655 63.7
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.6e-240 835.1 647 63.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.4e-239 833.2 657 63.6
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 5.3e-239 831.2 656 63.4
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 3.4e-238 828.6 656 63.0
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.3e-237 826.6 655 62.7
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 2.9e-237 825.5 680 61.6
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.4e-236 823.2 651 64.2
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 2.4e-236 822.4 648 63.6
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 9.3e-236 820.5 652 64.3
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.5e-235 818.5 652 63.8
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.8e-234 816.2 646 63.3
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 6.7e-234 814.3 647 64.6
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.1e-233 813.5 650 62.3
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.4e-231 806.6 654 61.8
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.4e-231 805.8 655 61.7
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 9.0e-231 803.9 638 63.2
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.5e-230 803.1 656 61.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 9.9e-230 800.4 655 61.5
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 9.9e-230 800.4 653 61.6
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 3.8e-229 798.5 655 61.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 3.8e-229 798.5 656 63.0
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.4e-228 796.6 655 61.4
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.9e-228 796.2 651 61.3
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.2e-228 795.4 612 64.2
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 4.2e-228 795.0 646 62.5
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.6e-227 793.1 659 61.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.7e-227 792.3 659 61.9
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.6e-227 791.6 649 62.6
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 6.7e-226 787.7 656 61.1
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 1.1e-225 786.9 656 60.7
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.5e-225 786.6 656 61.1
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.9e-225 786.2 656 61.3
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.3e-225 785.4 657 61.3
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 2.1e-224 782.7 656 60.5
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.1e-223 780.4 648 61.0
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.1e-223 780.4 648 61.0
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.1e-223 780.4 656 60.8
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.1e-223 780.4 647 63.2
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 9.0e-223 777.3 656 60.4
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 2.0e-222 776.2 653 61.6
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 3.4e-222 775.4 647 60.1
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 4.5e-222 775.0 651 59.6
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 7.6e-222 774.2 656 60.2
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.7e-221 773.1 649 60.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 8.4e-221 770.8 648 60.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 6.0e-219 764.6 647 60.6
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 6.0e-219 764.6 660 60.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.0e-218 763.8 618 62.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.3e-218 763.5 649 59.6
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.3e-218 762.7 627 62.0
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 3.0e-218 762.3 650 60.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 5.1e-218 761.5 656 60.1
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.5e-217 760.0 659 58.9
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 5.7e-217 758.1 619 64.5
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.6e-216 756.5 657 60.4
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.3e-213 746.9 660 58.6
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.5e-212 742.7 627 60.1
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.3e-210 736.1 645 57.8
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 5.7e-209 731.5 539 66.4
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.1e-207 725.7 655 55.9
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 4.1e-207 725.3 654 56.4
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.6e-203 713.4 642 56.4
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.1e-201 707.2 690 55.1
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 9.7e-193 677.6 651 53.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.8e-186 656.8 577 57.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-181 641.0 583 54.7
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 8.5e-181 637.9 657 51.9
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.3e-178 629.8 615 55.4
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.5e-177 627.1 579 56.5
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.4e-175 620.5 685 49.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.7e-174 616.3 487 62.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 3.5e-158 562.8 506 57.3
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 6.8e-154 548.5 592 49.8
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.2e-144 516.9 650 43.8
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.0e-141 508.1 539 51.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.0e-137 493.8 638 43.3
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.0e-133 481.5 654 42.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.6e-131 473.0 476 55.0
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 3.0e-125 453.4 254 83.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 1.1e-111 408.3 387 52.5
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.4e-106 391.3 485 46.2
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 9.0e-98 362.1 421 47.5
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 9.3e-95 352.1 344 52.3
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 2.5e-92 344.0 178 86.5
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.1e-90 338.6 655 36.0
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 6.9e-90 335.9 296 59.1
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.6e-81 307.4 364 45.6
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.3e-80 305.1 197 72.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.1e-55 222.2 170 64.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.5e-55 219.9 104 93.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 5.7e-52 209.9 106 84.9
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 3.0e-45 187.6 268 41.0
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 9.2e-42 176.0 215 43.3
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 4.1e-34 150.6 137 58.4
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 7.0e-34 149.8 200 40.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.8e-33 146.4 178 44.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.0e-32 146.0 490 29.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 8.9e-29 132.9 68 94.1
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.7e-27 127.5 58 89.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.7e-27 127.5 154 46.1
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 9.2e-26 122.9 102 59.8
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.1e-24 117.1 83 68.7
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-22 110.2 83 61.4
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.9e-18 98.6 72 62.5
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.0e-16 91.3 76 61.8
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 6.6e-16 90.1 74 63.5
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 8.7e-16 89.7 74 62.2
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 74 62.2
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 74 60.8
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.8e-14 84.7 74 60.8
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.8e-11 74.3 75 53.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 3.8e-11 74.3 75 53.3
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 2.1e-09 68.6 97 42.3
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.9e-08 64.3 97 39.2
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 6.6e-08 63.5 117 30.8


User provided reference genes

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